I have tested 1.8.5 and 1.10.2, both fail. (And Intel and Gnu compilers). Peter
----- Original Message ----- > which version of Open MPI is this? > Thanks > Edgar > On 2/10/2016 4:13 AM, Delphine Ramalingom wrote: > > Hello, > > > I try to compile a parallel version of hdf5. > > > I have error messages when I check with openmpi. > > > Support on HDF5 told me that the errors seem related to the new ompio > > implementation inside > > > open MPI for MPI-I/O. He suggests that I talk to the OMPI mailing list to > > resolve these errors. > > > For information, my version of openmpi is : gcc (GCC) 4.8.2 > > > mpicc --showme > > > gcc -I/programs/Compilateurs2/usr/include -pthread -Wl,-rpath > > -Wl,/programs/Compilateurs2/usr/lib -Wl,--enable-new-dtags > > -L/programs/Compilateurs2/usr/lib -lmpi > > > Errors are : > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > symbol: ompi_io_ompio_decode_datatype > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > symbol: ompi_io_ompio_decode_datatype > > > ------------------------------------------------------- > > > Primary job terminated normally, but 1 process returned > > > a non-zero exit code.. Per user-direction, the job has been aborted. > > > ------------------------------------------------------- > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > symbol: ompi_io_ompio_set_aggregator_props > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > symbol: ompi_io_ompio_set_aggregator_props > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > symbol: ompi_io_ompio_set_aggregator_props > > > Thanks in advance for your help. > > > Regards > > > Delphine > > > -- > > > Delphine Ramalingom Barbary | Ingénieure en Calcul Scientifique > > > Direction des Usages du Numérique (DUN) > > > Centre de Développement du Calcul Scientifique > > > TEL : 02 62 93 84 87- FAX : 02 62 93 81 06 > > -- > Edgar Gabriel > Associate Professor > Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of > Computer Science University of Houston > Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA > Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 > -- > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2016/02/28489.php
