Sorry, This was the wrong thread! please disregard the ast answer (1.8.5 and 1.10.2...)
Peter ----- Original Message ----- > I have tested 1.8.5 and 1.10.2, both fail. (And Intel and Gnu compilers). > Peter > ----- Original Message ----- > > which version of Open MPI is this? > > > Thanks > > > Edgar > > > On 2/10/2016 4:13 AM, Delphine Ramalingom wrote: > > > > Hello, > > > > > > I try to compile a parallel version of hdf5. > > > > > > I have error messages when I check with openmpi. > > > > > > Support on HDF5 told me that the errors seem related to the new ompio > > > implementation inside > > > > > > open MPI for MPI-I/O. He suggests that I talk to the OMPI mailing list to > > > resolve these errors. > > > > > > For information, my version of openmpi is : gcc (GCC) 4.8.2 > > > > > > mpicc --showme > > > > > > gcc -I/programs/Compilateurs2/usr/include -pthread -Wl,-rpath > > > -Wl,/programs/Compilateurs2/usr/lib -Wl,--enable-new-dtags > > > -L/programs/Compilateurs2/usr/lib -lmpi > > > > > > Errors are : > > > > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > > symbol: ompi_io_ompio_decode_datatype > > > > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > > symbol: ompi_io_ompio_decode_datatype > > > > > > ------------------------------------------------------- > > > > > > Primary job terminated normally, but 1 process returned > > > > > > a non-zero exit code.. Per user-direction, the job has been aborted. > > > > > > ------------------------------------------------------- > > > > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > > symbol: ompi_io_ompio_set_aggregator_props > > > > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > > symbol: ompi_io_ompio_set_aggregator_props > > > > > > .../hdf5-1.8.16_gnu/testpar/.libs/t_mpi: symbol lookup error: > > > /programs/Compilateurs2/usr/lib/openmpi/mca_fcoll_two_phase.so: undefined > > > symbol: ompi_io_ompio_set_aggregator_props > > > > > > Thanks in advance for your help. > > > > > > Regards > > > > > > Delphine > > > > > > -- > > > > > > Delphine Ramalingom Barbary | Ingénieure en Calcul Scientifique > > > > > > Direction des Usages du Numérique (DUN) > > > > > > Centre de Développement du Calcul Scientifique > > > > > > TEL : 02 62 93 84 87- FAX : 02 62 93 81 06 > > > > > -- > > > Edgar Gabriel > > > Associate Professor > > > Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of > > Computer Science University of Houston > > > Philip G. Hoffman Hall, Room 524 Houston, TX-77204, USA > > > Tel: +1 (713) 743-3857 Fax: +1 (713) 743-3335 > > > -- > > > _______________________________________________ > > > users mailing list > > > us...@open-mpi.org > > > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > > > Link to this post: > > http://www.open-mpi.org/community/lists/users/2016/02/28489.php > > _______________________________________________ > users mailing list > us...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/users > Link to this post: > http://www.open-mpi.org/community/lists/users/2016/02/28490.php
