Hello Charles,
Thank you for telling me how to unpack the files. I'm sorry, but actually the
following command didn't work.
% zcat xplor-nih-3.6-Linux_x86_64.old.tar.gz | tar xf -
% zcat xplor-nih-3.6-db.tar.gz | tar xf -
The reason may be that the files are doubly packed. In the case of
xplor-nih-3.6-db.tar.gz, I finally succeeded in unpacking using following
command.
% gunzip xplor-nih-3.6-db.tar.gz
% tar xvf xplor-nih-3.6-db.tar
On the other hand, in the case of xplor-nih-3.6-Linux_x86_64.old.tar.gz, the
"gunzip" command didn't work. The error massage is "invalid compressed
data--format violated".
The error happened in version 3.5 as well. Could you send me the ".tar"
version, which is not doubly packed, if available. I think it can be unpacked
even in my PC.
Best Regards,
Arata
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旭化成ファーマ株式会社 (Asahi Kasei Pharma Corporation)
医薬研究センター (Pharmaceuticals Research Center)
先端創薬研究部 (Laboratory for Drug Discovery)
佐宗 新 (Arata Saso)
Tel : +81-(0)558-76-7112 Fax : +81-(0)558-76-7137
静岡県伊豆の国市三福632-1 〒 : 410-2321
(632-1, Mifuku, Izunokuni, Shizuoka 410-2321, Japan)
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-----Original Message-----
From: Charles Schwieters <[email protected]>
Sent: Monday, December 19, 2022 11:46 PM
To: 佐宗 新(Saso, Arata) <[email protected]>
Cc: Xplor-NIH mailing list <[email protected]>
Subject: Re: How can I unpack the files without connection with internet?
Hello Arata--
>
> Although I tried the command below, the download failed. The reason
> may be that the Linux PC is not directly connected the internet.
> For security, the files are transported via another PC. Could you let
> me know how to unpack the files without connection with internet ?
>
You are correct: the installer script requires internet access. To install from
the .tar.gz files follow the instructions here:
https://jpn01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fbit.niddk.nih.gov%2Fxplor-nih%2FINSTALL.txt&data=05%7C01%7Csaso.ac%40om.asahi-kasei.co.jp%7C4ef1ef22814f49457ba208dae1cfdbae%7Cfdc3f8bd993b4d3098b4f531ed2ecc5c%7C0%7C0%7C638070580109050462%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=gha6Wq9Mkxc%2F8h4U0n%2F8tlE06NjN%2BJqteUWXtWYvHLo%3D&reserved=0
These are the important steps:
-obtain a copy of the platform independent -db distribution file in addition
to one or more platform specific binary file.
-unpack these files wherever you plan on installing xplor.
% cd /opt
% zcat xplor-nih-3.6-Linux_x86_64.old.tar.gz | tar xf -
% zcat xplor-nih-3.6-db.tar.gz | tar xf -
-generate the xplor command and helper commands.
% cd xplor-nih-3.6
% ./configure
The xplor script and helper programs are then in /opt/xplor-nih-3.6/bin
best regards--
Charles
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