On 1 October 2016 at 20:14, Mahdi, Sam <sam.mahdi....@my.csun.edu> wrote: > Hi Edward, > > Oh ok. Thank you for your help, I was able to resolve the problems I had > with both proteins, and now they are both running. Since there is symmetry > within the dimer, both chain A and chain B will give me the same S^2 results > correct?
Hi Sam, That depends. If you superimpose A and B and have an RMSD of 0.000000000000000000000, then the S2 values will be identical. But if the docking software changed the monomer structures slightly so the RMSD is not exactly zero, then the S2 values will be slightly different for some residues. You can use relax to superimpose structures and determine the RMSD to very high precision, if you like, but I'll leave that to you as a learning exercise ;) Regards, Edward _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
