Re: OutOfMemory error with Spark ML 1.5 logreg example
Hi,
Can you try to using save method instead of write?
ex: out_df.save("path","parquet")
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Mon, Sep 7, 2015 at 3:35 PM, Zoltán Tóth wrote:
> Aaand, the error! :)
>
> Exception in thread "org.apache.hadoop.hdfs.PeerCache@4e000abf"
> Exception: java.lang.OutOfMemoryError thrown from the
> UncaughtExceptionHandler in thread "org.apache.hadoop.hdfs.PeerCache@4e000abf"
> Exception in thread "Thread-7"
> Exception: java.lang.OutOfMemoryError thrown from the
> UncaughtExceptionHandler in thread "Thread-7"
> Exception in thread "LeaseRenewer:r...@docker.rapidminer.com:8020"
> Exception: java.lang.OutOfMemoryError thrown from the
> UncaughtExceptionHandler in thread
> "LeaseRenewer:r...@docker.rapidminer.com:8020"
> Exception in thread "Reporter"
> Exception: java.lang.OutOfMemoryError thrown from the
> UncaughtExceptionHandler in thread "Reporter"
> Exception in thread "qtp2115718813-47"
> Exception: java.lang.OutOfMemoryError thrown from the
> UncaughtExceptionHandler in thread "qtp2115718813-47"
>
> Exception: java.lang.OutOfMemoryError thrown from the
> UncaughtExceptionHandler in thread "sparkDriver-scheduler-1"
>
> Log Type: stdout
>
> Log Upload Time: Mon Sep 07 09:03:01 -0400 2015
>
> Log Length: 986
>
> Traceback (most recent call last):
> File "spark-ml.py", line 33, in
> out_df.write.parquet("/tmp/logparquet")
> File
> "/var/lib/hadoop-yarn/cache/yarn/nm-local-dir/usercache/root/appcache/application_1441224592929_0022/container_1441224592929_0022_01_01/pyspark.zip/pyspark/sql/readwriter.py",
> line 422, in parquet
> File
> "/var/lib/hadoop-yarn/cache/yarn/nm-local-dir/usercache/root/appcache/application_1441224592929_0022/container_1441224592929_0022_01_01/py4j-0.8.2.1-src.zip/py4j/java_gateway.py",
> line 538, in __call__
> File
> "/var/lib/hadoop-yarn/cache/yarn/nm-local-dir/usercache/root/appcache/application_1441224592929_0022/container_1441224592929_0022_01_01/pyspark.zip/pyspark/sql/utils.py",
> line 36, in deco
> File
> "/var/lib/hadoop-yarn/cache/yarn/nm-local-dir/usercache/root/appcache/application_1441224592929_0022/container_1441224592929_0022_01_01/py4j-0.8.2.1-src.zip/py4j/protocol.py",
> line 300, in get_return_value
> py4j.protocol.Py4JJavaError
>
>
>
> On Mon, Sep 7, 2015 at 3:27 PM, Zoltán Tóth wrote:
>
>> Hi,
>>
>> When I execute the Spark ML Logisitc Regression example in pyspark I run
>> into an OutOfMemory exception. I'm wondering if any of you experienced the
>> same or has a hint about how to fix this.
>>
>> The interesting bit is that I only get the exception when I try to write
>> the result DataFrame into a file. If I only "print" any of the results, it
>> all works fine.
>>
>> My Setup:
>> Spark 1.5.0-SNAPSHOT built for Hadoop 2.6.0 (I'm working with the latest
>> nightly build)
>> Build flags: -Psparkr -Phadoop-2.6 -Phive -Phive-thriftserver -Pyarn
>> -DzincPort=3034
>>
>> I'm using the default resource setup
>> 15/09/07 08:49:04 INFO yarn.YarnAllocator: Will request 2 executor
>> containers, each with 1 cores and 1408 MB memory including 384 MB overhead
>> 15/09/07 08:49:04 INFO yarn.YarnAllocator: Container request (host: Any,
>> capability: )
>> 15/09/07 08:49:04 INFO yarn.YarnAllocator: Container request (host: Any,
>> capability: )
>>
>> The script I'm executing:
>> from pyspark import SparkContext, SparkConf
>> from pyspark.sql import SQLContext
>>
>> conf = SparkConf().setAppName("pysparktest")
>> sc = SparkContext(conf=conf)
>> sqlContext = SQLContext(sc)
>>
>> from pyspark.mllib.regression import LabeledPoint
>> from pyspark.mllib.linalg import Vector, Vectors
>>
>> training = sc.parallelize((
>> LabeledPoint(1.0, Vectors.dense(0.0, 1.1, 0.1)),
>> LabeledPoint(0.0, Vectors.dense(2.0, 1.0, -1.0)),
>> LabeledPoint(0.0, Vectors.dense(2.0, 1.3, 1.0)),
>> LabeledPoint(1.0, Vectors.dense(0.0, 1.2, -0.5
>>
>> training_df = training.toDF()
>>
>> from pyspark.ml.classification import LogisticRegression
>>
>> reg = LogisticRegression()
>>
>> reg.setMaxIter(10).setRegParam(0.01)
>> model = reg.fit(training.toDF())
>>
>> test = sc.parallelize((
>> LabeledPoint(1.0, Vectors.dense(-1.0, 1.5, 1.3)),
>> LabeledPoint(0.0, Vectors.dense(3.0, 2.0, -0.1)),
>> LabeledPoint(1.0, Vectors.dense(0.0, 2.2, -1.5
>>
>> out_df = model.transform(test.toDF())
>>
>> out_df.write.parquet("/tmp/logparquet")
>>
>> And the command:
>> spark-submit --master yarn --deploy-mode cluster spark-ml.py
>>
>> Thanks,
>> z
>>
>
>
Re: Mesos + Spark
Thanks, but something is not clear... I have the mesos cluster. - I want to submit my application and scheduled with chronos. - For cluster mode I need a dispatcher, this is another container (machine in the real world)? What will this do? It's needed when I using chronos? - How can I access to my spark job from chronos? I think submit in client mode is not fit to my condition, that's right? Thanks b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Wed, Jul 22, 2015 at 4:51 PM, Dean Wampler deanwamp...@gmail.com wrote: This page, http://spark.apache.org/docs/latest/running-on-mesos.html, covers many of these questions. If you submit a job with the option --supervise, it will be restarted if it fails. You can use Chronos for scheduling. You can create a single streaming job with a 10 minute batch interval, if that works for your every 10-min. need. Dean Wampler, Ph.D. Author: Programming Scala, 2nd Edition http://shop.oreilly.com/product/0636920033073.do (O'Reilly) Typesafe http://typesafe.com @deanwampler http://twitter.com/deanwampler http://polyglotprogramming.com On Wed, Jul 22, 2015 at 3:53 AM, boci boci.b...@gmail.com wrote: Hi guys! I'm a new in mesos. I have two spark application (one streaming and one batch). I want to run both app in mesos cluster. Now for testing I want to run in docker container so I started a simple redjack/mesos-master, but I think a lot of think unclear for me (both mesos and spark-mesos). If I have a mesos cluster (for testing it will be some docker container) i need a separate machine (container) to run my spark job? Or can I submit the cluster and schedule (chronos or I dunno)? How can I run the streaming job? What happened if the controller died? Or if I call spark-submit with master=mesos my application started and I can forget? How can I run in every 10 min without submit in every 10 min? How can I run my streaming app in HA mode? Thanks b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
Mesos + Spark
Hi guys! I'm a new in mesos. I have two spark application (one streaming and one batch). I want to run both app in mesos cluster. Now for testing I want to run in docker container so I started a simple redjack/mesos-master, but I think a lot of think unclear for me (both mesos and spark-mesos). If I have a mesos cluster (for testing it will be some docker container) i need a separate machine (container) to run my spark job? Or can I submit the cluster and schedule (chronos or I dunno)? How can I run the streaming job? What happened if the controller died? Or if I call spark-submit with master=mesos my application started and I can forget? How can I run in every 10 min without submit in every 10 min? How can I run my streaming app in HA mode? Thanks b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
Spark streaming with kafka
Hi guys, I using spark streaming with kafka... In local machine (start as java application without using spark-submit) it's work, connect to kafka and do the job (*). I tried to put into spark docker container (hadoop 2.6, spark 1.3.1, try spark submit wil local[5] and yarn-client too ) but I'm out of success... No error on the console (the application started), I see something received from kafka but the result is not written out to elasticsearch... Where can I start the debug? I see in the spark console two job, both 0/1... Thanks -- Skype: boci13, Hangout: boci.b...@gmail.com
Re: Strange ClassNotFound exeption
Yeah, I have same jar with same result, I run in docker container and I using same docker container with my another project... the only difference is the postgresql jdbc driver and the custom RDD... no additional dependencies (both single jar generated with same assembly configuration with same dependencies) and the second is work like a charm Another idea? 2015. máj. 24. 2:41 ezt írta (Ted Yu yuzhih...@gmail.com): In my local maven repo, I found: $ jar tvf /Users/tyu/.m2/repository//org/spark-project/akka/akka-actor_2.10/2.3.4-spark/akka-actor_2.10-2.3.4-spark.jar | grep SelectionPath 521 Mon Sep 29 12:05:36 PDT 2014 akka/actor/SelectionPathElement.class Is the above jar in your classpath ? On Sat, May 23, 2015 at 5:05 PM, boci boci.b...@gmail.com wrote: Hi guys! I have a small spark application. It's query some data from postgres, enrich it and write to elasticsearch. When I deployed into spark container I got a very fustrating error: https://gist.github.com/b0c1/66527e00bada1e4c0dc3 Spark version: 1.3.1 Hadoop version: 2.6.0 Additional info: serialization: kryo rdd: custom rdd to query I not understand 1. akka.actor.SelectionPath doesn't exists in 1.3.1 2. I checked all dependencies in my project, I only have org.spark-project.akka:akka-*_2.10:2.3.4-spark:jar doesn't have 3. I not found any reference for this... 4. I created own RDD, it's work, but I need to register to kryo? (mapRow using ResultSet, I need to create 5. I used some months ago and it's already worked with spark 1.2... I recompiled with 1.3.1 but I got this strange error Any idea? -- Skype: boci13, Hangout: boci.b...@gmail.com
Strange ClassNotFound exeption
Hi guys! I have a small spark application. It's query some data from postgres, enrich it and write to elasticsearch. When I deployed into spark container I got a very fustrating error: https://gist.github.com/b0c1/66527e00bada1e4c0dc3 Spark version: 1.3.1 Hadoop version: 2.6.0 Additional info: serialization: kryo rdd: custom rdd to query I not understand 1. akka.actor.SelectionPath doesn't exists in 1.3.1 2. I checked all dependencies in my project, I only have org.spark-project.akka:akka-*_2.10:2.3.4-spark:jar doesn't have 3. I not found any reference for this... 4. I created own RDD, it's work, but I need to register to kryo? (mapRow using ResultSet, I need to create 5. I used some months ago and it's already worked with spark 1.2... I recompiled with 1.3.1 but I got this strange error Any idea? -- Skype: boci13, Hangout: boci.b...@gmail.com
Re: Standalone spark
Thanks dude... I think I will pull up a docker container for integration test -- Skype: boci13, Hangout: boci.b...@gmail.com On Thu, Feb 26, 2015 at 12:22 AM, Sean Owen so...@cloudera.com wrote: Yes, been on the books for a while ... https://issues.apache.org/jira/browse/SPARK-2356 That one just may always be a known 'gotcha' in Windows; it's kind of a Hadoop gotcha. I don't know that Spark 100% works on Windows and it isn't tested on Windows. On Wed, Feb 25, 2015 at 11:05 PM, boci boci.b...@gmail.com wrote: Thanks your fast answer... in windows it's not working, because hadoop (surprise suprise) need winutils.exe. Without this it's not working, but if you not set the hadoop directory You simply get 15/02/26 00:03:16 ERROR Shell: Failed to locate the winutils binary in the hadoop binary path java.io.IOException: Could not locate executable null\bin\winutils.exe in the Hadoop binaries. b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Wed, Feb 25, 2015 at 11:50 PM, Sean Owen so...@cloudera.com wrote: Spark and Hadoop should be listed as 'provided' dependency in your Maven or SBT build. But that should make it available at compile time. On Wed, Feb 25, 2015 at 10:42 PM, boci boci.b...@gmail.com wrote: Hi, I have a little question. I want to develop a spark based application, but spark depend to hadoop-client library. I think it's not necessary (spark standalone) so I excluded from sbt file.. the result is interesting. My trait where I create the spark context not compiled. The error: ... scala.reflect.internal.Types$TypeError: bad symbolic reference. A signature in SparkContext.class refers to term mapred [error] in package org.apache.hadoop which is not available. [error] It may be completely missing from the current classpath, or the version on [error] the classpath might be incompatible with the version used when compiling SparkContext.class. ... I used this class for integration test. I'm using windows and I don't want to using hadoop for integration test. How can I solve this? Thanks Janos
Re: MLLib beginner question
Xiangrui: Hi, I want to using this with streaming and with job too. I using kafka (streaming) and elasticsearch (job) as source and want to calculate sentiment value from the input text. Simon: great, you have any doc how can I embed into my application without using the http interface? (how can I direct call the service?) b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Tue, Dec 23, 2014 at 1:35 AM, Xiangrui Meng men...@gmail.com wrote: How big is the dataset you want to use in prediction? -Xiangrui On Mon, Dec 22, 2014 at 1:47 PM, boci boci.b...@gmail.com wrote: Hi! I want to try out spark mllib in my spark project, but I got a little problem. I have training data (external file), but the real data com from another rdd. How can I do that? I try to simple using same SparkContext to boot rdd (first I create rdd using sc.textFile() and after NaiveBayes.train... After that I want to fetch the real data using same context and internal the map using the predict. But My application never exit (I think stucked or something). Why not work this solution? Thanks b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
MLLib beginner question
Hi! I want to try out spark mllib in my spark project, but I got a little problem. I have training data (external file), but the real data com from another rdd. How can I do that? I try to simple using same SparkContext to boot rdd (first I create rdd using sc.textFile() and after NaiveBayes.train... After that I want to fetch the real data using same context and internal the map using the predict. But My application never exit (I think stucked or something). Why not work this solution? Thanks b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
Re: Out of any idea
Hi i created a demo input. https://gist.github.com/b0c1/e3721af839feec433b56#file-gistfile1-txt-L10 As you see in line 10 the json received (json/string nevermind) After that everything is ok, except the processing not started... Any idea? Please help guys... I doesn't have any idea what I miss... dependency? wrong spark version? No error in the log just the processing is not started... -- Skype: boci13, Hangout: boci.b...@gmail.com On Sun, Jul 20, 2014 at 4:58 AM, Krishna Sankar ksanka...@gmail.com wrote: Probably you have - if not, try a very simple app in the docker container and make sure it works. Sometimes resource contention/allocation can get in the way. This happened to me in the YARN container. Also try single worker thread. Cheers k/ On Sat, Jul 19, 2014 at 2:39 PM, boci boci.b...@gmail.com wrote: Hi guys! I run out of ideas... I created a spark streaming job (kafka - spark - ES). If I start my app local machine (inside the editor, but connect to the real kafka and ES) the application work correctly. If I start it in my docker container (same kafka and ES, local mode (local[4]) like inside my editor) the application connect to kafka, receive the message but after that nothing happened (I put config/log4j.properties to debug mode and I see BlockGenerator receive the data bu after that nothing happened with that. (first step I simply run a map to print the received data with log4j) I hope somebody can help... :( b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
Uber jar with SBT
Hi Guys, I try to create spark uber jar with sbt but I have a lot of problem... I want to use the following: - Spark streaming - Kafka - Elsaticsearch - HBase the current jar size is cca 60M and it's not working. - When I deploy with spark-submit: It's running and exit without any error - When I try to start with local[*] mode, it's say: Exception in thread main java.lang.NoClassDefFoundError: org/apache/spark/Logging = but I start with java -cp /.../spark-assembly-1.0.1-hadoop2.2.0.jar -jar my.jar Any idea how can solve this? (which lib required to set provided wich required for run... later I want to run this jar in yarn cluster) b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
Re: Uber jar with SBT
Hi! I using java7, I found the problem. I not run start and await termination on streaming context, now it's work BUT spark-submit never return (it's run in the foreground and receive the kafka streams)... what I miss? (I want to send the job to standalone cluster worker process) b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Sat, Jul 19, 2014 at 3:32 PM, Sean Owen so...@cloudera.com wrote: Are you building / running with Java 6? I imagine your .jar files has more than 65536 files, and Java 6 has various issues with jars this large. If possible, use Java 7 everywhere. https://issues.apache.org/jira/browse/SPARK-1520 On Sat, Jul 19, 2014 at 2:30 PM, boci boci.b...@gmail.com wrote: Hi Guys, I try to create spark uber jar with sbt but I have a lot of problem... I want to use the following: - Spark streaming - Kafka - Elsaticsearch - HBase the current jar size is cca 60M and it's not working. - When I deploy with spark-submit: It's running and exit without any error - When I try to start with local[*] mode, it's say: Exception in thread main java.lang.NoClassDefFoundError: org/apache/spark/Logging = but I start with java -cp /.../spark-assembly-1.0.1-hadoop2.2.0.jar -jar my.jar Any idea how can solve this? (which lib required to set provided wich required for run... later I want to run this jar in yarn cluster) b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
Out of any idea
Hi guys! I run out of ideas... I created a spark streaming job (kafka - spark - ES). If I start my app local machine (inside the editor, but connect to the real kafka and ES) the application work correctly. If I start it in my docker container (same kafka and ES, local mode (local[4]) like inside my editor) the application connect to kafka, receive the message but after that nothing happened (I put config/log4j.properties to debug mode and I see BlockGenerator receive the data bu after that nothing happened with that. (first step I simply run a map to print the received data with log4j) I hope somebody can help... :( b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
sbt + idea + test
Hi guys, I want to use Elasticsearch and HBase in my spark project, I want to create a test. I pulled up ES and Zookeeper, but if I put val htest = new HBaseTestingUtility() to my app I got a strange exception (compilation time, not runtime). https://gist.github.com/b0c1/4a4b3f6350816090c3b5 Any idea? -- Skype: boci13, Hangout: boci.b...@gmail.com
Kafka/ES question
Hi! I try to use spark with kafka, everything is work but I found a little problem. I create a small test application which connect to real kafka cluster, send a message and read it back. It's work, but when I run my test second time (send/read) it's read the first and the second stream (maybe the offset is not stored in ZK or I dunno). At the end I store the processed message in ES but I want to avoid the data duplication. Any idea how can I solve this? b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com
Re: ElasticSearch enrich
Another question. In the foreachRDD I will initialize the JobConf, but in
this place how can I get information from the items?
I have an identifier in the data which identify the required ES index (so
how can I set dynamic index in the foreachRDD) ?
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Fri, Jun 27, 2014 at 12:30 AM, Holden Karau hol...@pigscanfly.ca wrote:
Just your luck I happened to be working on that very talk today :) Let me
know how your experiences with Elasticsearch Spark go :)
On Thu, Jun 26, 2014 at 3:17 PM, boci boci.b...@gmail.com wrote:
Wow, thanks your fast answer, it's help a lot...
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 11:48 PM, Holden Karau hol...@pigscanfly.ca
wrote:
Hi b0c1,
I have an example of how to do this in the repo for my talk as well, the
specific example is at
https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/IndexTweetsLive.scala
. Since DStream doesn't have a saveAsHadoopDataset we use foreachRDD and
then call saveAsHadoopDataset on the RDD that gets passed into the
function we provide to foreachRDD.
e.g.
stream.foreachRDD{(data, time) =
val jobconf = ...
data.map(prepareDataForIndexing).saveAsHadoopDataset(jobConf)
}
Hope that helps :)
Cheers,
Holden :)
On Thu, Jun 26, 2014 at 2:23 PM, boci boci.b...@gmail.com wrote:
Thanks. I without local option I can connect with es remote, now I only
have one problem. How can I use elasticsearch-hadoop with spark streaming?
I mean DStream doesn't have saveAsHadoopFiles method, my second problem
the output index is depend by the input data.
Thanks
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 10:10 AM, Nick Pentreath
nick.pentre...@gmail.com wrote:
You can just add elasticsearch-hadoop as a dependency to your project
to user the ESInputFormat and ESOutputFormat (
https://github.com/elasticsearch/elasticsearch-hadoop). Some other
basics here:
http://www.elasticsearch.org/guide/en/elasticsearch/hadoop/current/spark.html
For testing, yes I think you will need to start ES in local mode (just
./bin/elasticsearch) and use the default config (host = localhost, port =
9200).
On Thu, Jun 26, 2014 at 9:04 AM, boci boci.b...@gmail.com wrote:
That's okay, but hadoop has ES integration. what happened if I run
saveAsHadoopFile without hadoop (or I must need to pull up hadoop
programatically? (if I can))
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 1:20 AM, Holden Karau hol...@pigscanfly.ca
wrote:
On Wed, Jun 25, 2014 at 4:16 PM, boci boci.b...@gmail.com wrote:
Hi guys, thanks the direction now I have some problem/question:
- in local (test) mode I want to use ElasticClient.local to create
es connection, but in prodution I want to use ElasticClient.remote, to
this
I want to pass ElasticClient to mapPartitions, or what is the best
practices?
In this case you probably want to make the ElasticClient inside of
mapPartitions (since it isn't serializable) and if you want to use a
different client in local mode just have a flag that control what type
of
client you create.
- my stream output is write into elasticsearch. How can I
test output.saveAsHadoopFile[ESOutputFormat](-) in local environment?
- After store the enriched data into ES, I want to generate
aggregated data (EsInputFormat) how can I test it in local?
I think the simplest thing to do would be use the same client in
mode and just start single node elastic search cluster.
Thanks guys
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Wed, Jun 25, 2014 at 1:33 AM, Holden Karau hol...@pigscanfly.ca
wrote:
So I'm giving a talk at the Spark summit on using Spark
ElasticSearch, but for now if you want to see a simple demo which uses
elasticsearch for geo input you can take a look at my quick dirty
implementation with TopTweetsInALocation (
https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/TopTweetsInALocation.scala
). This approach uses the ESInputFormat which avoids the difficulty of
having to manually create ElasticSearch clients.
This approach might not work for your data, e.g. if you need to
create a query
Re: ElasticSearch enrich
Ok I found dynamic resources, but I have a frustrating problem. This is the
flow:
kafka - enrich X - enrich Y - enrich Z - foreachRDD - save
My problem is: if I do this it's not work, the enrich functions not called,
but if I put a print it's does. for example if I do this:
kafka - enrich X - enrich Y - print - enrich Z - foreachRDD
The enrich X and enrich Y called but enrich Z not
if I put the print after the enrich Z it's will be printed. How can I solve
this? (what can I do to call the foreachRDD I put breakpoint inside the map
function (where I'm generate the writable) but it's not called)
Any idea?
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Fri, Jun 27, 2014 at 4:53 PM, boci boci.b...@gmail.com wrote:
Another question. In the foreachRDD I will initialize the JobConf, but in
this place how can I get information from the items?
I have an identifier in the data which identify the required ES index (so
how can I set dynamic index in the foreachRDD) ?
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Fri, Jun 27, 2014 at 12:30 AM, Holden Karau hol...@pigscanfly.ca
wrote:
Just your luck I happened to be working on that very talk today :) Let me
know how your experiences with Elasticsearch Spark go :)
On Thu, Jun 26, 2014 at 3:17 PM, boci boci.b...@gmail.com wrote:
Wow, thanks your fast answer, it's help a lot...
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 11:48 PM, Holden Karau hol...@pigscanfly.ca
wrote:
Hi b0c1,
I have an example of how to do this in the repo for my talk as well,
the specific example is at
https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/IndexTweetsLive.scala
. Since DStream doesn't have a saveAsHadoopDataset we use foreachRDD and
then call saveAsHadoopDataset on the RDD that gets passed into the
function we provide to foreachRDD.
e.g.
stream.foreachRDD{(data, time) =
val jobconf = ...
data.map(prepareDataForIndexing).saveAsHadoopDataset(jobConf)
}
Hope that helps :)
Cheers,
Holden :)
On Thu, Jun 26, 2014 at 2:23 PM, boci boci.b...@gmail.com wrote:
Thanks. I without local option I can connect with es remote, now I
only have one problem. How can I use elasticsearch-hadoop with spark
streaming? I mean DStream doesn't have saveAsHadoopFiles method, my
second problem the output index is depend by the input data.
Thanks
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 10:10 AM, Nick Pentreath
nick.pentre...@gmail.com wrote:
You can just add elasticsearch-hadoop as a dependency to your project
to user the ESInputFormat and ESOutputFormat (
https://github.com/elasticsearch/elasticsearch-hadoop). Some other
basics here:
http://www.elasticsearch.org/guide/en/elasticsearch/hadoop/current/spark.html
For testing, yes I think you will need to start ES in local mode
(just ./bin/elasticsearch) and use the default config (host = localhost,
port = 9200).
On Thu, Jun 26, 2014 at 9:04 AM, boci boci.b...@gmail.com wrote:
That's okay, but hadoop has ES integration. what happened if I run
saveAsHadoopFile without hadoop (or I must need to pull up hadoop
programatically? (if I can))
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 1:20 AM, Holden Karau hol...@pigscanfly.ca
wrote:
On Wed, Jun 25, 2014 at 4:16 PM, boci boci.b...@gmail.com wrote:
Hi guys, thanks the direction now I have some problem/question:
- in local (test) mode I want to use ElasticClient.local to create
es connection, but in prodution I want to use ElasticClient.remote,
to this
I want to pass ElasticClient to mapPartitions, or what is the
best practices?
In this case you probably want to make the ElasticClient inside of
mapPartitions (since it isn't serializable) and if you want to use a
different client in local mode just have a flag that control what type
of
client you create.
- my stream output is write into elasticsearch. How can I
test output.saveAsHadoopFile[ESOutputFormat](-) in local
environment?
- After store the enriched data into ES, I want to generate
aggregated data (EsInputFormat) how can I test it in local?
I think the simplest thing to do would be use the same client in
mode and just start single node
Re: ElasticSearch enrich
This is a simply scalatest. I start a SparkConf, set the master to local
(set the serializer etc), pull up kafka and es connection send a message to
kafka and wait 30sec to processing.
It's run in IDEA no magick trick.
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Fri, Jun 27, 2014 at 11:11 PM, Holden Karau hol...@pigscanfly.ca wrote:
So a few quick questions:
1) What cluster are you running this against? Is it just local? Have you
tried local[4]?
2) When you say breakpoint, how are you setting this break point? There is
a good chance your breakpoint mechanism doesn't work in a distributed
environment, could you instead cause a side effect (like writing to a file)?
Cheers,
Holden :)
On Fri, Jun 27, 2014 at 2:04 PM, boci boci.b...@gmail.com wrote:
Ok I found dynamic resources, but I have a frustrating problem. This is
the flow:
kafka - enrich X - enrich Y - enrich Z - foreachRDD - save
My problem is: if I do this it's not work, the enrich functions not
called, but if I put a print it's does. for example if I do this:
kafka - enrich X - enrich Y - print - enrich Z - foreachRDD
The enrich X and enrich Y called but enrich Z not
if I put the print after the enrich Z it's will be printed. How can I
solve this? (what can I do to call the foreachRDD I put breakpoint inside
the map function (where I'm generate the writable) but it's not called)
Any idea?
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Fri, Jun 27, 2014 at 4:53 PM, boci boci.b...@gmail.com wrote:
Another question. In the foreachRDD I will initialize the JobConf, but
in this place how can I get information from the items?
I have an identifier in the data which identify the required ES index
(so how can I set dynamic index in the foreachRDD) ?
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Fri, Jun 27, 2014 at 12:30 AM, Holden Karau hol...@pigscanfly.ca
wrote:
Just your luck I happened to be working on that very talk today :) Let
me know how your experiences with Elasticsearch Spark go :)
On Thu, Jun 26, 2014 at 3:17 PM, boci boci.b...@gmail.com wrote:
Wow, thanks your fast answer, it's help a lot...
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 11:48 PM, Holden Karau hol...@pigscanfly.ca
wrote:
Hi b0c1,
I have an example of how to do this in the repo for my talk as well,
the specific example is at
https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/IndexTweetsLive.scala
. Since DStream doesn't have a saveAsHadoopDataset we use foreachRDD and
then call saveAsHadoopDataset on the RDD that gets passed into the
function we provide to foreachRDD.
e.g.
stream.foreachRDD{(data, time) =
val jobconf = ...
data.map(prepareDataForIndexing).saveAsHadoopDataset(jobConf)
}
Hope that helps :)
Cheers,
Holden :)
On Thu, Jun 26, 2014 at 2:23 PM, boci boci.b...@gmail.com wrote:
Thanks. I without local option I can connect with es remote, now I
only have one problem. How can I use elasticsearch-hadoop with spark
streaming? I mean DStream doesn't have saveAsHadoopFiles method, my
second problem the output index is depend by the input data.
Thanks
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 10:10 AM, Nick Pentreath
nick.pentre...@gmail.com wrote:
You can just add elasticsearch-hadoop as a dependency to your
project to user the ESInputFormat and ESOutputFormat (
https://github.com/elasticsearch/elasticsearch-hadoop). Some other
basics here:
http://www.elasticsearch.org/guide/en/elasticsearch/hadoop/current/spark.html
For testing, yes I think you will need to start ES in local mode
(just ./bin/elasticsearch) and use the default config (host =
localhost,
port = 9200).
On Thu, Jun 26, 2014 at 9:04 AM, boci boci.b...@gmail.com wrote:
That's okay, but hadoop has ES integration. what happened if I run
saveAsHadoopFile without hadoop (or I must need to pull up hadoop
programatically? (if I can))
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 1:20 AM, Holden Karau
hol...@pigscanfly.ca wrote:
On Wed, Jun 25, 2014
Re: ElasticSearch enrich
That's okay, but hadoop has ES integration. what happened if I run saveAsHadoopFile without hadoop (or I must need to pull up hadoop programatically? (if I can)) b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Thu, Jun 26, 2014 at 1:20 AM, Holden Karau hol...@pigscanfly.ca wrote: On Wed, Jun 25, 2014 at 4:16 PM, boci boci.b...@gmail.com wrote: Hi guys, thanks the direction now I have some problem/question: - in local (test) mode I want to use ElasticClient.local to create es connection, but in prodution I want to use ElasticClient.remote, to this I want to pass ElasticClient to mapPartitions, or what is the best practices? In this case you probably want to make the ElasticClient inside of mapPartitions (since it isn't serializable) and if you want to use a different client in local mode just have a flag that control what type of client you create. - my stream output is write into elasticsearch. How can I test output.saveAsHadoopFile[ESOutputFormat](-) in local environment? - After store the enriched data into ES, I want to generate aggregated data (EsInputFormat) how can I test it in local? I think the simplest thing to do would be use the same client in mode and just start single node elastic search cluster. Thanks guys b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Wed, Jun 25, 2014 at 1:33 AM, Holden Karau hol...@pigscanfly.ca wrote: So I'm giving a talk at the Spark summit on using Spark ElasticSearch, but for now if you want to see a simple demo which uses elasticsearch for geo input you can take a look at my quick dirty implementation with TopTweetsInALocation ( https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/TopTweetsInALocation.scala ). This approach uses the ESInputFormat which avoids the difficulty of having to manually create ElasticSearch clients. This approach might not work for your data, e.g. if you need to create a query for each record in your RDD. If this is the case, you could instead look at using mapPartitions and setting up your Elasticsearch connection inside of that, so you could then re-use the client for all of the queries on each partition. This approach will avoid having to serialize the Elasticsearch connection because it will be local to your function. Hope this helps! Cheers, Holden :) On Tue, Jun 24, 2014 at 4:28 PM, Mayur Rustagi mayur.rust...@gmail.com wrote: Its not used as default serializer for some issues with compatibility requirement to register the classes.. Which part are you getting as nonserializable... you need to serialize that class if you are sending it to spark workers inside a map, reduce , mappartition or any of the operations on RDD. Mayur Rustagi Ph: +1 (760) 203 3257 http://www.sigmoidanalytics.com @mayur_rustagi https://twitter.com/mayur_rustagi On Wed, Jun 25, 2014 at 4:52 AM, Peng Cheng pc...@uow.edu.au wrote: I'm afraid persisting connection across two tasks is a dangerous act as they can't be guaranteed to be executed on the same machine. Your ES server may think its a man-in-the-middle attack! I think its possible to invoke a static method that give you a connection in a local 'pool', so nothing will sneak into your closure, but its too complex and there should be a better option. Never use kryo before, if its that good perhaps we should use it as the default serializer -- View this message in context: http://apache-spark-user-list.1001560.n3.nabble.com/ElasticSearch-enrich-tp8209p8222.html Sent from the Apache Spark User List mailing list archive at Nabble.com. -- Cell : 425-233-8271 -- Cell : 425-233-8271
Re: ElasticSearch enrich
Thanks. I without local option I can connect with es remote, now I only have one problem. How can I use elasticsearch-hadoop with spark streaming? I mean DStream doesn't have saveAsHadoopFiles method, my second problem the output index is depend by the input data. Thanks -- Skype: boci13, Hangout: boci.b...@gmail.com On Thu, Jun 26, 2014 at 10:10 AM, Nick Pentreath nick.pentre...@gmail.com wrote: You can just add elasticsearch-hadoop as a dependency to your project to user the ESInputFormat and ESOutputFormat ( https://github.com/elasticsearch/elasticsearch-hadoop). Some other basics here: http://www.elasticsearch.org/guide/en/elasticsearch/hadoop/current/spark.html For testing, yes I think you will need to start ES in local mode (just ./bin/elasticsearch) and use the default config (host = localhost, port = 9200). On Thu, Jun 26, 2014 at 9:04 AM, boci boci.b...@gmail.com wrote: That's okay, but hadoop has ES integration. what happened if I run saveAsHadoopFile without hadoop (or I must need to pull up hadoop programatically? (if I can)) b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Thu, Jun 26, 2014 at 1:20 AM, Holden Karau hol...@pigscanfly.ca wrote: On Wed, Jun 25, 2014 at 4:16 PM, boci boci.b...@gmail.com wrote: Hi guys, thanks the direction now I have some problem/question: - in local (test) mode I want to use ElasticClient.local to create es connection, but in prodution I want to use ElasticClient.remote, to this I want to pass ElasticClient to mapPartitions, or what is the best practices? In this case you probably want to make the ElasticClient inside of mapPartitions (since it isn't serializable) and if you want to use a different client in local mode just have a flag that control what type of client you create. - my stream output is write into elasticsearch. How can I test output.saveAsHadoopFile[ESOutputFormat](-) in local environment? - After store the enriched data into ES, I want to generate aggregated data (EsInputFormat) how can I test it in local? I think the simplest thing to do would be use the same client in mode and just start single node elastic search cluster. Thanks guys b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Wed, Jun 25, 2014 at 1:33 AM, Holden Karau hol...@pigscanfly.ca wrote: So I'm giving a talk at the Spark summit on using Spark ElasticSearch, but for now if you want to see a simple demo which uses elasticsearch for geo input you can take a look at my quick dirty implementation with TopTweetsInALocation ( https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/TopTweetsInALocation.scala ). This approach uses the ESInputFormat which avoids the difficulty of having to manually create ElasticSearch clients. This approach might not work for your data, e.g. if you need to create a query for each record in your RDD. If this is the case, you could instead look at using mapPartitions and setting up your Elasticsearch connection inside of that, so you could then re-use the client for all of the queries on each partition. This approach will avoid having to serialize the Elasticsearch connection because it will be local to your function. Hope this helps! Cheers, Holden :) On Tue, Jun 24, 2014 at 4:28 PM, Mayur Rustagi mayur.rust...@gmail.com wrote: Its not used as default serializer for some issues with compatibility requirement to register the classes.. Which part are you getting as nonserializable... you need to serialize that class if you are sending it to spark workers inside a map, reduce , mappartition or any of the operations on RDD. Mayur Rustagi Ph: +1 (760) 203 3257 http://www.sigmoidanalytics.com @mayur_rustagi https://twitter.com/mayur_rustagi On Wed, Jun 25, 2014 at 4:52 AM, Peng Cheng pc...@uow.edu.au wrote: I'm afraid persisting connection across two tasks is a dangerous act as they can't be guaranteed to be executed on the same machine. Your ES server may think its a man-in-the-middle attack! I think its possible to invoke a static method that give you a connection in a local 'pool', so nothing will sneak into your closure, but its too complex and there should be a better option. Never use kryo before, if its that good perhaps we should use it as the default serializer -- View this message in context: http://apache-spark-user-list.1001560.n3.nabble.com/ElasticSearch-enrich-tp8209p8222.html Sent from the Apache Spark User List mailing list archive at Nabble.com. -- Cell : 425-233-8271
Re: ElasticSearch enrich
Wow, thanks your fast answer, it's help a lot...
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 11:48 PM, Holden Karau hol...@pigscanfly.ca wrote:
Hi b0c1,
I have an example of how to do this in the repo for my talk as well, the
specific example is at
https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/IndexTweetsLive.scala
. Since DStream doesn't have a saveAsHadoopDataset we use foreachRDD and
then call saveAsHadoopDataset on the RDD that gets passed into the
function we provide to foreachRDD.
e.g.
stream.foreachRDD{(data, time) =
val jobconf = ...
data.map(prepareDataForIndexing).saveAsHadoopDataset(jobConf)
}
Hope that helps :)
Cheers,
Holden :)
On Thu, Jun 26, 2014 at 2:23 PM, boci boci.b...@gmail.com wrote:
Thanks. I without local option I can connect with es remote, now I only
have one problem. How can I use elasticsearch-hadoop with spark streaming?
I mean DStream doesn't have saveAsHadoopFiles method, my second problem
the output index is depend by the input data.
Thanks
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 10:10 AM, Nick Pentreath
nick.pentre...@gmail.com wrote:
You can just add elasticsearch-hadoop as a dependency to your project to
user the ESInputFormat and ESOutputFormat (
https://github.com/elasticsearch/elasticsearch-hadoop). Some other
basics here:
http://www.elasticsearch.org/guide/en/elasticsearch/hadoop/current/spark.html
For testing, yes I think you will need to start ES in local mode (just
./bin/elasticsearch) and use the default config (host = localhost, port =
9200).
On Thu, Jun 26, 2014 at 9:04 AM, boci boci.b...@gmail.com wrote:
That's okay, but hadoop has ES integration. what happened if I run
saveAsHadoopFile without hadoop (or I must need to pull up hadoop
programatically? (if I can))
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Thu, Jun 26, 2014 at 1:20 AM, Holden Karau hol...@pigscanfly.ca
wrote:
On Wed, Jun 25, 2014 at 4:16 PM, boci boci.b...@gmail.com wrote:
Hi guys, thanks the direction now I have some problem/question:
- in local (test) mode I want to use ElasticClient.local to create es
connection, but in prodution I want to use ElasticClient.remote, to this
I
want to pass ElasticClient to mapPartitions, or what is the best
practices?
In this case you probably want to make the ElasticClient inside of
mapPartitions (since it isn't serializable) and if you want to use a
different client in local mode just have a flag that control what type of
client you create.
- my stream output is write into elasticsearch. How can I
test output.saveAsHadoopFile[ESOutputFormat](-) in local environment?
- After store the enriched data into ES, I want to generate aggregated
data (EsInputFormat) how can I test it in local?
I think the simplest thing to do would be use the same client in mode
and just start single node elastic search cluster.
Thanks guys
b0c1
--
Skype: boci13, Hangout: boci.b...@gmail.com
On Wed, Jun 25, 2014 at 1:33 AM, Holden Karau hol...@pigscanfly.ca
wrote:
So I'm giving a talk at the Spark summit on using Spark
ElasticSearch, but for now if you want to see a simple demo which uses
elasticsearch for geo input you can take a look at my quick dirty
implementation with TopTweetsInALocation (
https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/TopTweetsInALocation.scala
). This approach uses the ESInputFormat which avoids the difficulty of
having to manually create ElasticSearch clients.
This approach might not work for your data, e.g. if you need to
create a query for each record in your RDD. If this is the case, you
could
instead look at using mapPartitions and setting up your Elasticsearch
connection inside of that, so you could then re-use the client for all
of
the queries on each partition. This approach will avoid having to
serialize
the Elasticsearch connection because it will be local to your function.
Hope this helps!
Cheers,
Holden :)
On Tue, Jun 24, 2014 at 4:28 PM, Mayur Rustagi
mayur.rust...@gmail.com wrote:
Its not used as default serializer for some issues with
compatibility requirement to register the classes..
Which part are you getting as nonserializable... you need to
serialize that class if you are sending it to spark workers
Re: ElasticSearch enrich
Hi guys, thanks the direction now I have some problem/question: - in local (test) mode I want to use ElasticClient.local to create es connection, but in prodution I want to use ElasticClient.remote, to this I want to pass ElasticClient to mapPartitions, or what is the best practices? - my stream output is write into elasticsearch. How can I test output.saveAsHadoopFile[ESOutputFormat](-) in local environment? - After store the enriched data into ES, I want to generate aggregated data (EsInputFormat) how can I test it in local? Thanks guys b0c1 -- Skype: boci13, Hangout: boci.b...@gmail.com On Wed, Jun 25, 2014 at 1:33 AM, Holden Karau hol...@pigscanfly.ca wrote: So I'm giving a talk at the Spark summit on using Spark ElasticSearch, but for now if you want to see a simple demo which uses elasticsearch for geo input you can take a look at my quick dirty implementation with TopTweetsInALocation ( https://github.com/holdenk/elasticsearchspark/blob/master/src/main/scala/com/holdenkarau/esspark/TopTweetsInALocation.scala ). This approach uses the ESInputFormat which avoids the difficulty of having to manually create ElasticSearch clients. This approach might not work for your data, e.g. if you need to create a query for each record in your RDD. If this is the case, you could instead look at using mapPartitions and setting up your Elasticsearch connection inside of that, so you could then re-use the client for all of the queries on each partition. This approach will avoid having to serialize the Elasticsearch connection because it will be local to your function. Hope this helps! Cheers, Holden :) On Tue, Jun 24, 2014 at 4:28 PM, Mayur Rustagi mayur.rust...@gmail.com wrote: Its not used as default serializer for some issues with compatibility requirement to register the classes.. Which part are you getting as nonserializable... you need to serialize that class if you are sending it to spark workers inside a map, reduce , mappartition or any of the operations on RDD. Mayur Rustagi Ph: +1 (760) 203 3257 http://www.sigmoidanalytics.com @mayur_rustagi https://twitter.com/mayur_rustagi On Wed, Jun 25, 2014 at 4:52 AM, Peng Cheng pc...@uow.edu.au wrote: I'm afraid persisting connection across two tasks is a dangerous act as they can't be guaranteed to be executed on the same machine. Your ES server may think its a man-in-the-middle attack! I think its possible to invoke a static method that give you a connection in a local 'pool', so nothing will sneak into your closure, but its too complex and there should be a better option. Never use kryo before, if its that good perhaps we should use it as the default serializer -- View this message in context: http://apache-spark-user-list.1001560.n3.nabble.com/ElasticSearch-enrich-tp8209p8222.html Sent from the Apache Spark User List mailing list archive at Nabble.com. -- Cell : 425-233-8271
ElasticSearch enrich
Hi guys, I have a small question. I want to create a Worker class which using ElasticClient to make query to elasticsearch. (I want to enrich my data with geo search result). How can I do that? I try to create a worker instance with ES host/port parameter but spark throw an exceptino (my class not serializable). Any idea? Thanks b0c1
Re: ElasticSearch enrich
Ok but in this case where can I store the ES connection? Or all document create new ES connection inside the worker? -- Skype: boci13, Hangout: boci.b...@gmail.com On Wed, Jun 25, 2014 at 1:01 AM, Peng Cheng pc...@uow.edu.au wrote: make sure all queries are called through class methods and wrap your query info with a class having only simple properties (strings, collections etc). If you can't find such wrapper you can also use SerializableWritable wrapper out-of-the-box, but its not recommended. (developer-api and make fat closures that run slowly) -- View this message in context: http://apache-spark-user-list.1001560.n3.nabble.com/ElasticSearch-enrich-tp8209p8214.html Sent from the Apache Spark User List mailing list archive at Nabble.com.
