You couldnt have the wrong TLS spans could you - if you have added extra residues have you included them in the TLS group?
Eleanor

Sun Tang wrote:
Hi James,

I did check teh B-factors and they are similar to the flanking regions (about 40). The difference density appeared at the later stage of refinement (TLS and restrained in CCP4i). What do you think and how to do it?
Best,

Sun Tang

James Irving <[EMAIL PROTECTED]> wrote: Hi Sun,
I suggest checking that the b-factors for those residues aren't
unexpectedly high compared to those in the flankinh regions.
Cheers,
James


On 1/23/08, Sun Tang  wrote:
Hello Everyone,

  When I refined a structure, I found strong difference density Fo-Fc at 3
sigma contour for the for five residues which already have occupancy of 1.
The density is continuous and so strong as if I did not put the residues
there. Why was that? Can I put greater than 1 occupancy for those residues?

  Thank you very much for your opinions and suggestions!

  Best wishes,

  Sun Tang


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