Re: [ccp4bb] to extract protein sequence from a rebuilt pdb file

[Phil Evans]

echo "sequence single" | pdbset xyzin rebuilt.pdb sequence rebuilt.seq


On 1 Oct 2008, at 09:40, Jane Bailey wrote:

Hi, all

I am currently rebuilting my structure in coot, and the protein sequence is around 98% rebuilt yet. I am looking for a way to extract protein sequence from the rebuilt.pdb so that I could see clearly which part need to be rebuilt by sequence alignment. Any ideas about this? thanks

Best
Jane