Thanks, I have found out that swiss pdb viewer could easily export sequence, thanks all.
On Wed, Oct 1, 2008 at 5:49 PM, S. Thiyagarajan <[EMAIL PROTECTED]> wrote: > Hi > I would take it pdb deposition site (rcsb.org) and feed the pdb into the > validation server. That gives out the sequence of the input pdb > > regards > > ======================================================== > == S. Thiyagarajan == > == #5344 Scott Hall == > == Department of Biochemistry and Molecular Biology == > == School of Medicine, Wayne State University == > == 540 E. Canfield St. == > == Detroit, MI 48201 U.S.A == > == Phone: +1-313-577-0618 (lab) == > +1-248-412-3758 (Cell) == > ======================================================== > > --- On *Wed, 10/1/08, Jane Bailey <[EMAIL PROTECTED]>* wrote: > > From: Jane Bailey <[EMAIL PROTECTED]> > Subject: [ccp4bb] to extract protein sequence from a rebuilt pdb file > To: CCP4BB@JISCMAIL.AC.UK > Date: Wednesday, October 1, 2008, 4:40 AM > > > Hi, all > > I am currently rebuilting my structure in coot, and the protein sequence is > around 98% rebuilt yet. I am looking for a way to extract protein sequence > from the rebuilt.pdb so that I could see clearly which part need to be > rebuilt by sequence alignment. Any ideas about this? thanks > > Best > Jane > > >
