On Thursday, 02 February 2012, you wrote:
> Dear members,
>
> Apologize for this off-topic question. I am looking for a protein sequence
> alignment tool which is capable to generate a particular output file
> similar to the attached format (please see the attached picture). I have
> been looking at some popular programs but none of them can show the
> conserved amino acids by colored blocks as shown in the attached file.
>
> Maybe some of you have seen some programs can do this? Thank you.
That looks similar to the output of TeXshade, with the shading
mode set to "hydropathy".
Ethan
