Hi Laurent has contacted me off-board about this and sent me an example of a CBF file extracted from the HDF5.
As far as I can see, there is no problem with the CBF file created by eiger2cbf - it can be processed correctly by iMosflm, and the miniCBF header is not missing any of the information that Mosflm requires. From this, I think that there's an issue with XDSAPP - so probably something for Manfred to have a look at! In answer to Kay's questions - (1) Massif-1 (2) That would be my first port of call... (3) not tried yet... (4) the exact error messages start with what Laurent gave originally, i.e. - > Some important experimental parameters are missing from the images header which is not so useful, but there is an additional traceback - > Some important experimental parameters are missing from the images header > Traceback (most recent call last): > File "/mnt/maredsous/programs/bin/xdsit.py", line 4018, in <module> > manual_process() > File "/mnt/maredsous/programs/bin/xdsit.py", line 3897, in manual_process > manual_index() > File "/mnt/maredsous/programs/bin/xdsit.py", line 3885, in manual_index > print(params['detector']) > KeyError: ‘detector' Harry -- Dr Harry Powell Chairman of European Crystallographic Association SIG9 (Crystallographic Computing) On 1 Jun 2018, at 07:21, Kay Diederichs wrote: > Hi Laurent, > > this prompte a couple of questions - > 1. where did you collect the data? > 2. can this not be answered by the beamline staff? After all they should know > their detector, and procedures for use of its data. > 3. what are the exact error messages when using the neggia plugin? I guess > Dectris would care if their plugin cannot read "their" data. > 4. what are the exact error messages / missing items when using eiger2cbf / > hdf2cbf-mini? > > best, > Kay > > On Thu, 31 May 2018 14:58:52 +0200, maveyrau <laurent.maveyr...@ipbs.fr> > wrote: > >> Hi CCP4ers >> >> we recently collected many datasets on dectris detectors producing hd5 >> files. I would like to use some auto processing tools to process them >> (xdsapp, xdsme…). As far as I can say, xdsapp or xdsme cannot process hd5 >> natively. I tried to convert them to cbf format (eiger2cbf, >> hdf2mini-cbf,...), but then it seams that the header of the caf files are >> lacking some required informations… >> >> Any idea how to convert hd5 files to complete caf files ? Are there any >> plans for xdsapp to be able to work on hd5 files ? >> >> thanks for your help >> >> Laurent >> ---------------------------------------------------------- >> Laurent Maveyraud laurent.maveyraud AT ipbs DOT fr >> P I C T --- Plateforme Intégrée de Criblage de Toulouse >> Université Paul Sabatier / CNRS / I.P.B.S. UMR 5089 >> Département Biologie Structurale et Biophysique >> http://cribligand.ipbs.fr http://www.ipbs.fr >> 205 route de Narbonne 31077 TOULOUSE Cedex FRANCE >> Tél: +33 (0)561 175 435 Mob.: +33 (0)646 042 111 >> ---------------------------------------------------------- >> >> >> >> >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 >> > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
