Dear all, With respect to the usage of the XDSAPP program, it depends on the generate_XDS.INP script. For our local installation, I have edited the script to include the "LIB=/path/to/dectrisneggia.so" in the resulting XDS input file and this works as expected without any problems. This does depend on knowing the location of the file on the filesystem, and hence not really easily portable.
Nonetheless and easy and quick workaround for a local system. Best regards Folmer Fredslund Staff scientist DTU Biosustain fre. 1. jun. 2018 11.04 skrev Harry Powell < 0000193323b1e616-dmarc-requ...@jiscmail.ac.uk>: > Hi > > Laurent has contacted me off-board about this and sent me an example of a > CBF file extracted from the HDF5. > > As far as I can see, there is no problem with the CBF file created by > eiger2cbf - it can be processed correctly by iMosflm, and the miniCBF > header is not missing any of the information that Mosflm requires. > > From this, I think that there's an issue with XDSAPP - so probably > something for Manfred to have a look at! > > In answer to Kay's questions - > > (1) Massif-1 > (2) That would be my first port of call... > (3) not tried yet... > (4) the exact error messages start with what Laurent gave originally, i.e. > - > > Some important experimental parameters are missing from the images header > > > which is not so useful, but there is an additional traceback - > > Some important experimental parameters are missing from the images header > Traceback (most recent call last): > File "/mnt/maredsous/programs/bin/xdsit.py", line 4018, in <module> > manual_process() > File "/mnt/maredsous/programs/bin/xdsit.py", line 3897, in manual_process > manual_index() > File "/mnt/maredsous/programs/bin/xdsit.py", line 3885, in manual_index > print(params['detector']) > KeyError: ‘detector' > > > Harry > -- > Dr Harry Powell > Chairman of European Crystallographic Association SIG9 (Crystallographic > Computing) > > > > > On 1 Jun 2018, at 07:21, Kay Diederichs wrote: > > Hi Laurent, > > this prompte a couple of questions - > 1. where did you collect the data? > 2. can this not be answered by the beamline staff? After all they should > know their detector, and procedures for use of its data. > 3. what are the exact error messages when using the neggia plugin? I guess > Dectris would care if their plugin cannot read "their" data. > 4. what are the exact error messages / missing items when using eiger2cbf > / hdf2cbf-mini? > > best, > Kay > > On Thu, 31 May 2018 14:58:52 +0200, maveyrau <laurent.maveyr...@ipbs.fr> > wrote: > > Hi CCP4ers > > > we recently collected many datasets on dectris detectors producing hd5 > files. I would like to use some auto processing tools to process them > (xdsapp, xdsme…). As far as I can say, xdsapp or xdsme cannot process hd5 > natively. I tried to convert them to cbf format (eiger2cbf, > hdf2mini-cbf,...), but then it seams that the header of the caf files are > lacking some required informations… > > > Any idea how to convert hd5 files to complete caf files ? Are there any > plans for xdsapp to be able to work on hd5 files ? > > > thanks for your help > > > Laurent > > ---------------------------------------------------------- > > Laurent Maveyraud laurent.maveyraud AT ipbs DOT fr > > P I C T --- Plateforme Intégrée de Criblage de Toulouse > > Université Paul Sabatier / CNRS / I.P.B.S. UMR 5089 > > Département Biologie Structurale et Biophysique > > http://cribligand.ipbs.fr http://www.ipbs.fr > > 205 route de Narbonne 31077 TOULOUSE Cedex FRANCE > > Tél: +33 (0)561 175 435 Mob.: +33 (0)646 042 111 > > ---------------------------------------------------------- > > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > > > > ------------------------------ > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1 > ######################################################################## To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB&A=1
