Please find the file: detailed.log attached. El martes, 23 de enero de 2018, 17:02:14 (UTC-5), Wolfgang Bangerth escribió: > > On 01/23/2018 02:13 PM, Bruno Turcksin wrote: > > > > mypath/dealii/source/lac/scalapack.cc:243:91: error: there are no > > arguments to ‘MPI_Comm_create_group’ that depend on a template > parameter, > > so a declaration of ‘MPI_Comm_create_group’ must be available > [-fpermissive] > > ierr = MPI_Comm_create_group(MPI_COMM_WORLD, group_union, 5, > > &mpi_communicator_union); > > > > Do you need scalapack? If you don't, just add DEAL_II_WITH_SCALAPACK=OFF > > Out of curiosity, can you also send the output of the detailed.log file in > your build directory? > > Best > W. > > -- > ------------------------------------------------------------------------ > Wolfgang Bangerth email: bang...@colostate.edu > <javascript:> > www: http://www.math.colostate.edu/~bangerth/ > >
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### # # deal.II configuration: # CMAKE_BUILD_TYPE: DebugRelease # BUILD_SHARED_LIBS: ON # CMAKE_INSTALL_PREFIX: /home/ju4nk4/Soft/dealii # CMAKE_SOURCE_DIR: /home/ju4nk4/Soft/dealii # (version 9.0.0-pre, shortrev 55c9e45) # CMAKE_BINARY_DIR: /home/ju4nk4/Soft/dealii/build # CMAKE_CXX_COMPILER: GNU 4.8.4 on platform Linux x86_64 # /usr/bin/c++ # CMAKE_C_COMPILER: /usr/bin/cc # CMAKE_Fortran_COMPILER: /usr/bin/gfortran # CMAKE_GENERATOR: Unix Makefiles # # Base configuration (prior to feature configuration): # DEAL_II_CXX_FLAGS: -pedantic -fPIC -Wall -Wextra -Wpointer-arith -Wwrite-strings -Wsynth -Wsign-compare -Wswitch -Woverloaded-virtual -Wno-deprecated-declarations -Wno-literal-suffix -std=c++11 # DEAL_II_CXX_FLAGS_RELEASE: -O2 -funroll-loops -funroll-all-loops -fstrict-aliasing -Wno-unused-local-typedefs # DEAL_II_CXX_FLAGS_DEBUG: -Og -ggdb -Wa,--compress-debug-sections # DEAL_II_LINKER_FLAGS: -Wl,--as-needed -rdynamic -fuse-ld=gold # DEAL_II_LINKER_FLAGS_RELEASE: # DEAL_II_LINKER_FLAGS_DEBUG: -ggdb # DEAL_II_DEFINITIONS: # DEAL_II_DEFINITIONS_RELEASE: # DEAL_II_DEFINITIONS_DEBUG: DEBUG # DEAL_II_USER_DEFINITIONS: # DEAL_II_USER_DEFINITIONS_REL: # DEAL_II_USER_DEFINITIONS_DEB: DEBUG # DEAL_II_INCLUDE_DIRS # DEAL_II_USER_INCLUDE_DIRS: # DEAL_II_BUNDLED_INCLUDE_DIRS: # DEAL_II_LIBRARIES: m # DEAL_II_LIBRARIES_RELEASE: # DEAL_II_LIBRARIES_DEBUG: # # Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON): # ( DEAL_II_WITH_64BIT_INDICES = OFF ) # ( DEAL_II_WITH_ADOLC = OFF ) # DEAL_II_WITH_ARPACK set up with external dependencies # ARPACK_LINKER_FLAGS = # ARPACK_LIBRARIES = /usr/lib/libarpack.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;/usr/lib/openmpi/lib/libmpi.so;dl;/usr/lib/x86_64-linux-gnu/libhwloc.so # ( DEAL_II_WITH_ASSIMP = OFF ) # DEAL_II_WITH_BOOST set up with bundled packages # BOOST_CXX_FLAGS = -Wno-unused-local-typedefs # BOOST_BUNDLED_INCLUDE_DIRS = /home/ju4nk4/Soft/dealii/bundled/boost-1.62.0/include # BOOST_LIBRARIES = rt # ( DEAL_II_WITH_CUDA = OFF ) # ( DEAL_II_WITH_CXX14 = OFF ) # ( DEAL_II_WITH_CXX17 = OFF ) # DEAL_II_WITH_GMSH set up with external dependencies # GMSH_EXE = /usr/bin/gmsh # ( DEAL_II_WITH_GSL = OFF ) # ( DEAL_II_WITH_HDF5 = OFF ) # DEAL_II_WITH_LAPACK set up with external dependencies # LAPACK_WITH_64BIT_BLAS_INDICES = OFF # LAPACK_LINKER_FLAGS = # LAPACK_LIBRARIES = /usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c # DEAL_II_WITH_METIS set up with external dependencies # METIS_VERSION = 5.1.0 # METIS_DIR = /home/ju4nk4/Soft/metis-5.1.0 # METIS_INCLUDE_DIRS = /home/ju4nk4/Soft/metis-5.1.0/include # METIS_USER_INCLUDE_DIRS = /home/ju4nk4/Soft/metis-5.1.0/include # METIS_LIBRARIES = /home/ju4nk4/Soft/metis-5.1.0/build/Linux-x86_64/libmetis/libmetis.a;/usr/lib/openmpi/lib/libmpi.so;dl;/usr/lib/x86_64-linux-gnu/libhwloc.so # DEAL_II_WITH_MPI set up with external dependencies # MPI_VERSION = 2.1 # OMPI_VERSION = 1.6.5 # MPI_C_COMPILER = /usr/bin/mpicc # MPI_CXX_COMPILER = /usr/bin/mpicxx # MPI_Fortran_COMPILER = /usr/bin/mpif90 # MPI_CXX_FLAGS = # MPI_LINKER_FLAGS = # MPI_INCLUDE_DIRS = /usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi # MPI_USER_INCLUDE_DIRS = /usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi # MPI_LIBRARIES = /usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi_f90.so;/usr/lib/openmpi/lib/libmpi_f77.so;/usr/lib/openmpi/lib/libmpi.so;dl;/usr/lib/x86_64-linux-gnu/libhwloc.so # DEAL_II_WITH_MUPARSER set up with bundled packages # MUPARSER_BUNDLED_INCLUDE_DIRS = /home/ju4nk4/Soft/dealii/bundled/muparser_v2_2_4//include # ( DEAL_II_WITH_NANOFLANN = OFF ) # ( DEAL_II_WITH_NETCDF = OFF ) # ( DEAL_II_WITH_OPENCASCADE = OFF ) # DEAL_II_WITH_P4EST set up with external dependencies # P4EST_VERSION = 1.1 # P4EST_DIR = /home/ju4nk4/Soft/FAST # P4EST_INCLUDE_DIRS = /home/ju4nk4/Soft/FAST/include # P4EST_USER_INCLUDE_DIRS = /home/ju4nk4/Soft/FAST/include # P4EST_LIBRARIES = /home/ju4nk4/Soft/FAST/lib/libp4est.so;/home/ju4nk4/Soft/FAST/lib/libsc.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;/usr/lib/openmpi/lib/libmpi.so;dl;/usr/lib/x86_64-linux-gnu/libhwloc.so # DEAL_II_WITH_PETSC set up with external dependencies # PETSC_VERSION = 3.6.0.0 # PETSC_DIR = /home/ju4nk4/Soft/petsc-3.6.0 # PETSC_INCLUDE_DIRS = /home/ju4nk4/Soft/petsc-3.6.0/include;/home/ju4nk4/Soft/petsc-3.6.0/complex/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi # PETSC_USER_INCLUDE_DIRS = /home/ju4nk4/Soft/petsc-3.6.0/include;/home/ju4nk4/Soft/petsc-3.6.0/complex/include;/usr/lib/openmpi/include;/usr/lib/openmpi/include/openmpi # PETSC_LIBRARIES = /home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libpetsc.so;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libcmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libdmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libsmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libzmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libmumps_common.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libpord.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libscalapack.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libsuperlu_dist_4.0.a;/usr/lib/liblapack.so;/usr/lib/libblas.so;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libparmetis.so;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libmetis.so;/usr/lib/openmpi/lib/libmpi_f90.so;/usr/lib/openmpi/lib/libmpi_f77.so;gfortran;quadmath;m;/usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libhwloc.so;pthread;dl # DEAL_II_WITH_SCALAPACK set up with external dependencies # SCALAPACK_LINKER_FLAGS = # SCALAPACK_LIBRARIES = /usr/lib/libscalapack-openmpi.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;gfortran;quadmath;m;c;/usr/lib/libblacs-openmpi.so;/usr/lib/libblacsCinit-openmpi.so;/usr/lib/libblacsF77init-openmpi.so;/usr/lib/openmpi/lib/libmpi_f90.so;/usr/lib/openmpi/lib/libmpi_f77.so;/usr/lib/openmpi/lib/libmpi.so;dl;/usr/lib/x86_64-linux-gnu/libhwloc.so # DEAL_II_WITH_SLEPC set up with external dependencies # SLEPC_VERSION = 3.6.0.0 # SLEPC_DIR = /home/ju4nk4/Soft/slepc-3.6.0 # SLEPC_INCLUDE_DIRS = /home/ju4nk4/Soft/slepc-3.6.0/complex/include;/home/ju4nk4/Soft/slepc-3.6.0/include # SLEPC_USER_INCLUDE_DIRS = /home/ju4nk4/Soft/slepc-3.6.0/complex/include;/home/ju4nk4/Soft/slepc-3.6.0/include # SLEPC_LIBRARIES = /home/ju4nk4/Soft/slepc-3.6.0/complex/lib/libslepc.so;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libpetsc.so;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libcmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libdmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libsmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libzmumps.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libmumps_common.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libpord.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libscalapack.a;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libsuperlu_dist_4.0.a;/usr/lib/liblapack.so;/usr/lib/libblas.so;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libparmetis.so;/home/ju4nk4/Soft/petsc-3.6.0/complex/lib/libmetis.so;/usr/lib/openmpi/lib/libmpi_f90.so;/usr/lib/openmpi/lib/libmpi_f77.so;gfortran;quadmath;m;/usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;/usr/lib/x86_64-linux-gnu/libhwloc.so;pthread;dl # ( DEAL_II_WITH_SUNDIALS = OFF ) # ( DEAL_II_WITH_THREADS = OFF ) # DEAL_II_WITH_TRILINOS set up with external dependencies # TRILINOS_VERSION = 12.4.2 # TRILINOS_DIR = /home/ju4nk4/Soft/trilinos-12.4.2 # TRILINOS_INCLUDE_DIRS = /home/ju4nk4/Soft/trilinos-12.4.2/include # TRILINOS_USER_INCLUDE_DIRS = /home/ju4nk4/Soft/trilinos-12.4.2/include # TRILINOS_LIBRARIES = /home/ju4nk4/Soft/trilinos-12.4.2/lib/libmuelu-adapters.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libmuelu-interface.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libmuelu.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteko.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libstratimikos.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libstratimikosbelos.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libstratimikosaztecoo.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libstratimikosamesos.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libstratimikosml.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libstratimikosifpack.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libifpack2-adapters.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libifpack2.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libzoltan2.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libanasazitpetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libModeLaplace.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libanasaziepetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libanasazi.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libbelostpetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libbelosepetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libbelos.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libml.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libifpack.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libpamgen_extras.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libpamgen.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libamesos2.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libamesos.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libgaleri-xpetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libgaleri.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libaztecoo.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libisorropia.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libxpetra-sup.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libxpetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libthyratpetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libthyraepetraext.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libthyraepetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libthyracore.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libepetraext.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtpetraext.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtpetrainout.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtpetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libkokkostsqr.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtpetrakernels.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtpetraclassiclinalg.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtpetraclassicnodeapi.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtpetraclassic.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libtriutils.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libzoltan.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libepetra.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libsacado.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/librtop.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteuchoskokkoscomm.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteuchoskokkoscompat.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteuchosremainder.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteuchosnumerics.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteuchoscomm.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteuchosparameterlist.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libteuchoscore.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libkokkosalgorithms.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libkokkoscontainers.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libkokkoscore.so;/home/ju4nk4/Soft/trilinos-12.4.2/lib/libgtest.so;/usr/lib/liblapack.so;/usr/lib/libblas.so;/usr/lib/openmpi/lib/libmpi_cxx.so;/usr/lib/openmpi/lib/libmpi.so;dl;/usr/lib/x86_64-linux-gnu/libhwloc.so # DEAL_II_WITH_UMFPACK set up with bundled packages # UMFPACK_BUNDLED_INCLUDE_DIRS = /home/ju4nk4/Soft/dealii/bundled/umfpack/UMFPACK/Include;/home/ju4nk4/Soft/dealii/bundled/umfpack/AMD/Include # DEAL_II_WITH_ZLIB set up with external dependencies # ZLIB_VERSION = 1.2.8 # ZLIB_INCLUDE_DIRS = /usr/include # ZLIB_LIBRARIES = /usr/lib/x86_64-linux-gnu/libz.so # # Component configuration: # ( DEAL_II_COMPONENT_DOCUMENTATION = OFF ) # DEAL_II_COMPONENT_EXAMPLES # ( DEAL_II_COMPONENT_PACKAGE = OFF ) # ( DEAL_II_COMPONENT_PYTHON_BINDINGS = OFF ) # ###
