If I remember correctly, I think those attributes were set in IdentifiedAnnotation via: ctakes-template-filler/desc/analysis_engine/TemplateFillerAnnotator.xml One can look at the logic in: org.apache.ctakes.template.filler.ae.TemplateFillerAnnotator [1]
Have you tried added that to the pipeline? [1] http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-template-filler/src/main/java/org/apache/ctakes/template/filler/ae/TemplateFillerAnnotator.java --Pei > -----Original Message----- > From: Chase Master [mailto:chasemast...@gmail.com] > Sent: Wednesday, March 19, 2014 1:56 PM > To: dev@ctakes.apache.org > Subject: getSeverity etc. for relation extractor > > Hi, > > I am trying to output the relations associated with DiseaseDisorderMentions > and other types. But I want to start by iterating over > DiseaseDisorderMention, not BinaryTextRelations since I want to be sure to > find them all, even if they have no associated relation. > > I always get null when using any of the getters like "getSeverity()". I am > using the example text "He had a slight fracture in the proximal right > fibula". > When I iterate over BinaryTextRelations, I see the following valid values: > BinaryTextRelation slightFracture = iterator.next(); > slightFracture.getArg1().getArgument().getCoveredText() is "fracture" > slightFracture.getArg2().getArgument().getCoveredText() is "slight". > However, for the "fracture" DiseaseDisorderMention, getSeverity() is null. > If it wasn't, I would then grab > disease.getSeverity().getArg1().getArgument().getCoveredText(), or for > Arg2. > > Thanks, > Chase
