Hi everyone,
Following a "sudo fink update-all", I was greeted with the following (which
left me scratching my head):
Information about 9508 packages read in 3 seconds.
fink needs help picking an alternative to satisfy a virtual dependency. The
candidates:
(1) octave: Matlab-like language for computations
(2) octave-atlas: Matlab-like language for computations
Pick one: [1]
fink needs help picking an alternative to satisfy a virtual dependency. The
candidates:
(1) gnuplot: Command-driven interactive plotting program
(2) gnuplot-nox: Command-driven interactive plotting program
(3) gnuplot-nogtk: Command-driven interactive plotting program
Pick one: [1]
fink needs help picking an alternative to satisfy a virtual dependency. The
candidates:
(1) help2man-perl588: Generates man pages from program output
(2) help2man-perl5100: Generates man pages from program output
Pick one: [1]
fink needs help picking an alternative to satisfy a virtual dependency. The
candidates:
(1) ptex-base: ASCII publishing TeX
(2) ptex-nox-base: ASCII publishing TeX
(3) tetex-nox-base: Base programs for a teTeX installation
(4) tetex-base: Base programs for a teTeX installation
(5) texlive-nox-base: Base programs for a TeX Live installation
(6) texlive-base: Base programs for a TeX Live installation
Pick one: [1]
fink needs help picking an alternative to satisfy a virtual dependency. The
candidates:
(1) texlive-base: Base programs for a TeX Live installation
(2) texlive-nox-base: Base programs for a TeX Live installation
Pick one: [1]
The following package will be installed or updated:
emboss
The following 263 additional packages will be installed:
app-defaults appleotffonts applesystemfonts aquaterm aquaterm-dev
aquaterm-shlibs atk1 atk1-shlibs audiofile audiofile-bin audiofile-shlibs
autoconf avahi avahi-dev bison cairo cairo-shlibs cloog cloog-shlibs cmake
compress-raw-bzip2-pm5100 compress-raw-zlib-pm5100 crypt-ssleay-pm5100
cyrus-sasl2-dev cyrus-sasl2-shlibs daemonic dbus dbus-dev dbus-glib1.2-dev
dbus-glib1.2-shlibs dbus-shlibs dbus1.3-dev dbus1.3-shlibs
default-icon-theme docbook-dsssl-nwalsh docbook-dtd docbook-utils docbook-xsl
doxygen emboss-libajax6-shlibs emboss-libnucleus6-shlibs esound esound-bin
esound-common esound-shlibs fftw3 fftw3-shlibs
fink-obsolete-packages flex-devel fondu freeglut freeglut-shlibs gcc44
gcc44-compiler gcc44-shlibs gconf2 gconf2-dev gconf2-shlibs getoptbin glib2-dev
glib2-shlibs glitz glitz-shlibs glpk-dev glpk-shlibs gmp gmp-shlibs
gnome-base gnome-common gnome-doc-utils gnome-icon-theme gnome-keyring-dev
gnome-keyring-shlibs gnome-mime-data gnome-vfs2-unified gnome-vfs2-unified-dev
gnome-vfs2-unified-shlibs gnuplot gst-plugins-base-0.10
gst-plugins-base-0.10-dev gst-plugins-base-0.10-shlibs gstreamer-0.10
gstreamer-0.10-dev gstreamer-0.10-shlibs gtk+2 gtk+2-dev gtk+2-shlibs gtk-doc
hdf5 hdf5-bin hdf5-shlibs help2man-perl588 html-parser-pm5100
html-tagset-pm icon-naming-utils intltool40 io-compress-pm5100 jadetex
lasi-dev lasi-shlibs libart2 libart2-shlibs libavahi-client3-shlibs
libavahi-common3-shlibs libavahi-core6-shlibs libavahi-glib1-dev
libavahi-glib1-shlibs libbonobo2 libbonobo2-dev libbonobo2-shlibs
libbonoboui2-dev libbonoboui2-shlibs libcdparanoia0-dev libcdparanoia0-shlibs
libcurl4 libdaemon libdaemon-shlibs libdatrie1 libdatrie1-shlibs libgcrypt
libgcrypt-shlibs libgettext3-dev libglade2 libglade2-shlibs libgmpxx-shlibs
libgnome2 libgnome2-dev libgnome2-shlibs libgnomecanvas2 libgnomecanvas2-dev
libgnomecanvas2-shlibs libgnomecups-dev libgnomecups-shlibs
libgnomeprint2.2-dev libgnomeprint2.2-shlibs libgnomeprintui2.2-dev
libgnomeprintui2.2-shlibs libgnomeui2-dev libgnomeui2-shlibs libgpg-error
libgpg-error-shlibs libidl2 libidl2-shlibs libidn libidn-shlibs libjasper.1
libjasper.1-shlibs libjpeg8 libkpathsea4 libkpathsea4-shlibs liblzma-shlibs
libmpc2 libmpc2-shlibs libmpfr1 libmpfr1-shlibs libogg libogg-shlibs liboil-0.3
liboil-0.3-shlibs libpng14 libpng14-shlibs librarian.08-shlibs
libtasn1-3 libtasn1-3-shlibs libthai libthai-dev libthai-shlibs
libtheora0-shlibs libtiff libtiff-bin libtiff-shlibs libtool14 libtool14-shlibs
libvorbis0-shlibs libwww libwww-bin libwww-pm5100 libwww-shlibs libxml2
libxml2-bin libxml2-py26 libxml2-shlibs libxslt libxslt-bin libxslt-shlibs
locale-gettext-pm588 make mysql-unified-dev mysql-unified-shlibs nkf ocaml
octave openjade openldap24-dev openldap24-shlibs openmotif3
openmotif3-shlibs opensp4 opensp4-dev opensp4-shlibs orbit2 orbit2-dev
orbit2-shlibs pango1-xft2-ft219 pango1-xft2-ft219-dev pango1-xft2-ft219-shlibs
passwd pdflib6 pdflib6-shlibs perl588-core pixman pixman-shlibs
plotutils plotutils-dev plotutils-shlibs plplot-dev plplot-shlibs postgresql84
postgresql84-dev postgresql84-shlibs ppl ppl-shlibs ptex-base ptex-texmf
ptexenc ptexenc-shlibs python26 python26-shlibs pyxml-py26 qhull
rarian rarian-compat sdl sdl-shlibs sed sgml-entities-iso8879 sgmls-pm
shared-mime-info suitesparse swig szip szip-shlibs t1lib5-nox t1lib5-nox-shlibs
t1lib5-x11 t1lib5-x11-shlibs texlive-base texlive-texmf uri-pm5100
wxgtk2.8 wxgtk2.8-shlibs xdg-base xfontpath xft2-dev xft2-shlibs xinitrc xmkmf
xml-namespacesupport-pm xml-parser-pm5100 xml-sax-expat-pm5100 xml-sax-pm5100
xml-simple-pm5100 xz
Do you want to continue? [Y/n] n
This is an EMBOSS update:
(i) emboss 6.3.1-101
Molecular Biology Open Software Suite
on:
Darwin 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010;
root:xnu-1504.7.4~1/RELEASE_I386 i386 i386
Question: when (or more importantly, why) did EMBOSS suddenly require the
installation of (all of) 263 dependencies, including what appears to be all of
GNOME?
Thanks in advance for insight into this.
Scott
**********************************************************************
Scott R. Santos
Department of Biological Sciences &
Cell and Molecular Biosciences Peak Program
Auburn University
101 Life Science Building, Rm. 128
Auburn, AL 36849
Tele # (334) 844-7410
Fax # (334) 844-1645
Email: san...@auburn.edu
Lab Website: http://www.auburn.edu/~santosr/
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