-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Removing now-former emboss maintainer.
On 8/10/10 2:30 PM, Scott R. Santos wrote: > > Hi everyone, > > Following a "sudo fink update-all", I was greeted with the following (which > left me scratching my head): > Don't use "sudo fink". > Information about 9508 packages read in 3 seconds. > > fink needs help picking an alternative to satisfy a virtual dependency. The > candidates: > > (1) octave: Matlab-like language for computations > (2) octave-atlas: Matlab-like language for computations > > Pick one: [1] > > fink needs help picking an alternative to satisfy a virtual dependency. The > candidates: > > (1) gnuplot: Command-driven interactive plotting program > (2) gnuplot-nox: Command-driven interactive plotting program > (3) gnuplot-nogtk: Command-driven interactive plotting program > > Pick one: [1] > > fink needs help picking an alternative to satisfy a virtual dependency. The > candidates: > > (1) help2man-perl588: Generates man pages from program output > (2) help2man-perl5100: Generates man pages from program output > > Pick one: [1] > > fink needs help picking an alternative to satisfy a virtual dependency. The > candidates: > > (1) ptex-base: ASCII publishing TeX > (2) ptex-nox-base: ASCII publishing TeX > (3) tetex-nox-base: Base programs for a teTeX installation > (4) tetex-base: Base programs for a teTeX installation > (5) texlive-nox-base: Base programs for a TeX Live installation > (6) texlive-base: Base programs for a TeX Live installation > > Pick one: [1] > > fink needs help picking an alternative to satisfy a virtual dependency. The > candidates: > > (1) texlive-base: Base programs for a TeX Live installation > (2) texlive-nox-base: Base programs for a TeX Live installation > > Pick one: [1] > The following package will be installed or updated: > emboss > The following 263 additional packages will be installed: > app-defaults appleotffonts applesystemfonts aquaterm aquaterm-dev > aquaterm-shlibs atk1 atk1-shlibs audiofile audiofile-bin audiofile-shlibs > autoconf avahi avahi-dev bison cairo cairo-shlibs cloog cloog-shlibs cmake > compress-raw-bzip2-pm5100 compress-raw-zlib-pm5100 crypt-ssleay-pm5100 > cyrus-sasl2-dev cyrus-sasl2-shlibs daemonic dbus dbus-dev dbus-glib1.2-dev > dbus-glib1.2-shlibs dbus-shlibs dbus1.3-dev dbus1.3-shlibs > default-icon-theme docbook-dsssl-nwalsh docbook-dtd docbook-utils > docbook-xsl doxygen emboss-libajax6-shlibs emboss-libnucleus6-shlibs esound > esound-bin esound-common esound-shlibs fftw3 fftw3-shlibs > fink-obsolete-packages flex-devel fondu freeglut freeglut-shlibs gcc44 > gcc44-compiler gcc44-shlibs gconf2 gconf2-dev gconf2-shlibs getoptbin > glib2-dev glib2-shlibs glitz glitz-shlibs glpk-dev glpk-shlibs gmp gmp-shlibs > gnome-base gnome-common gnome-doc-utils gnome-icon-theme gnome-keyring-dev > gnome-keyring-shlibs gnome-mime-data gnome-vfs2-unified > gnome-vfs2-unified-dev gnome-vfs2-unified-shlibs gnuplot gst-plugins-base-0.10 > gst-plugins-base-0.10-dev gst-plugins-base-0.10-shlibs gstreamer-0.10 > gstreamer-0.10-dev gstreamer-0.10-shlibs gtk+2 gtk+2-dev gtk+2-shlibs gtk-doc > hdf5 hdf5-bin hdf5-shlibs help2man-perl588 html-parser-pm5100 > html-tagset-pm icon-naming-utils intltool40 io-compress-pm5100 jadetex > lasi-dev lasi-shlibs libart2 libart2-shlibs libavahi-client3-shlibs > libavahi-common3-shlibs libavahi-core6-shlibs libavahi-glib1-dev > libavahi-glib1-shlibs libbonobo2 libbonobo2-dev libbonobo2-shlibs > libbonoboui2-dev libbonoboui2-shlibs libcdparanoia0-dev libcdparanoia0-shlibs > libcurl4 libdaemon libdaemon-shlibs libdatrie1 libdatrie1-shlibs libgcrypt > libgcrypt-shlibs libgettext3-dev libglade2 libglade2-shlibs libgmpxx-shlibs > libgnome2 libgnome2-dev libgnome2-shlibs libgnomecanvas2 libgnomecanvas2-dev > libgnomecanvas2-shlibs libgnomecups-dev libgnomecups-shlibs > libgnomeprint2.2-dev libgnomeprint2.2-shlibs libgnomeprintui2.2-dev > libgnomeprintui2.2-shlibs libgnomeui2-dev libgnomeui2-shlibs libgpg-error > libgpg-error-shlibs libidl2 libidl2-shlibs libidn libidn-shlibs libjasper.1 > libjasper.1-shlibs libjpeg8 libkpathsea4 libkpathsea4-shlibs liblzma-shlibs > libmpc2 libmpc2-shlibs libmpfr1 libmpfr1-shlibs libogg libogg-shlibs > liboil-0.3 liboil-0.3-shlibs libpng14 libpng14-shlibs librarian.08-shlibs > libtasn1-3 libtasn1-3-shlibs libthai libthai-dev libthai-shlibs > libtheora0-shlibs libtiff libtiff-bin libtiff-shlibs libtool14 > libtool14-shlibs libvorbis0-shlibs libwww libwww-bin libwww-pm5100 > libwww-shlibs libxml2 > libxml2-bin libxml2-py26 libxml2-shlibs libxslt libxslt-bin libxslt-shlibs > locale-gettext-pm588 make mysql-unified-dev mysql-unified-shlibs nkf ocaml > octave openjade openldap24-dev openldap24-shlibs openmotif3 > openmotif3-shlibs opensp4 opensp4-dev opensp4-shlibs orbit2 orbit2-dev > orbit2-shlibs pango1-xft2-ft219 pango1-xft2-ft219-dev > pango1-xft2-ft219-shlibs passwd pdflib6 pdflib6-shlibs perl588-core pixman > pixman-shlibs > plotutils plotutils-dev plotutils-shlibs plplot-dev plplot-shlibs > postgresql84 postgresql84-dev postgresql84-shlibs ppl ppl-shlibs ptex-base > ptex-texmf ptexenc ptexenc-shlibs python26 python26-shlibs pyxml-py26 qhull > rarian rarian-compat sdl sdl-shlibs sed sgml-entities-iso8879 sgmls-pm > shared-mime-info suitesparse swig szip szip-shlibs t1lib5-nox > t1lib5-nox-shlibs t1lib5-x11 t1lib5-x11-shlibs texlive-base texlive-texmf > uri-pm5100 > wxgtk2.8 wxgtk2.8-shlibs xdg-base xfontpath xft2-dev xft2-shlibs xinitrc > xmkmf xml-namespacesupport-pm xml-parser-pm5100 xml-sax-expat-pm5100 > xml-sax-pm5100 xml-simple-pm5100 xz > Do you want to continue? [Y/n] n > > This is an EMBOSS update: > > (i) emboss 6.3.1-101 > Molecular Biology Open Software Suite > > on: > > Darwin 10.4.0 Darwin Kernel Version 10.4.0: Fri Apr 23 18:28:53 PDT 2010; > root:xnu-1504.7.4~1/RELEASE_I386 i386 i386 > > Question: when (or more importantly, why) did EMBOSS suddenly require the > installation of (all of) 263 dependencies, including what appears to be all > of GNOME? > > Thanks in advance for insight into this. > > Scott > > ********************************************************************** > Scott R. Santos > Department of Biological Sciences & > Cell and Molecular Biosciences Peak Program > Auburn University > 101 Life Science Building, Rm. 128 > Auburn, AL 36849 > Tele # (334) 844-7410 > Fax # (334) 844-1645 > Email: san...@auburn.edu > Lab Website: http://www.auburn.edu/~santosr/ > ********************************************************************** > > > Is emboss the _only_ outdated package you had? If not, then don't use "fink update-all" if you don't want to build anything not related to it. The all-of-gnome thing probably came from gnuplot. You can use gnuplot-nogtk to avoid that. - -- Alexander Hansen Fink User Liaison -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.10 (Darwin) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEUEARECAAYFAkxhob8ACgkQB8UpO3rKjQ9xXgCXXpzmCxtEVVsTBSPP1vp3J9I+ 1wCcDvAYHiL+zj23BWHFtouBxPiuV08= =9JLO -----END PGP SIGNATURE----- ------------------------------------------------------------------------------ This SF.net email is sponsored by Make an app they can't live without Enter the BlackBerry Developer Challenge http://p.sf.net/sfu/RIM-dev2dev _______________________________________________ Fink-users mailing list Fink-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fink-users
