On 3/1/13 6:57 PM, Jack Howarth wrote: > On Fri, Mar 01, 2013 at 01:51:25PM -0700, Alexander Hansen wrote: >> On 3/1/13 9:42 AM, Valentina Erastova wrote: >>> >>> On 28 Feb 2013, at 20:41, Alexander Hansen <[email protected]> >>> wrote: >>> >>>> On 2/28/13 8:11 AM, Valentina Erastova wrote: >>>>> >>>>> On 28 Feb 2013, at 14:40, Alexander Hansen <[email protected]> >>>>> wrote: >>>>> >>>>>> On 2/27/13 5:14 AM, Valentina Erastova wrote: >>>>>>> Hello, >>>>>>> >>>>>>> I am trying to install gromacs 4.6 on my mac and I am getting errors. I >>>>>>> have done self update and reduced number of jobs to 1, as recommended. >>>>>>> I still cannot make progress. The errors I get are: >>>>>>> >>>>>>> >>>>>>> CMake Error at CMakeLists.txt:800 (message): >>>>>>> Cannot compile AVX intrinsics. Consider switching compiler. >>>>>>> >>>>>>> >>>>>>> -- Configuring incomplete, errors occurred! >>>>>>> ### execution of /tmp/fink.1WQn_ failed, exit code 1 >>>>>>> ### execution of /tmp/fink.K719v failed, exit code 1 >>>>>>> >>>>>>> >>>>>>> Thank you very much! >>>>>>> >>>>>>> >>>>> >>>>> Thank you for your reply! I have already manually installed it. >>>>> Nevertheless I am due to install it on another machine - both are OX >>>>> 10.8.2 >>>>> >>>>> >>>> >>>> Hopefully today's update to gromacs will work for you, then. >>> >>> installs fine now! >>> >>> >>>> >>>>>> >>>>>> Can you provide the line of output before your error message above, for >>>>>> some context? >>>>>> >>>>>> What operating system version are you running? >>>>>> What Xcode version are you using? ("fink list xcode" is a quick way to >>>>>> get that) >>>>> >>>>> Information about 7005 packages read in 1 seconds. >>>>> i xcode 4.5.0.0.1.1249367 [virtual package >>>>> representing the developer tools] >>>>> i xcode.app 4.6-1 [virtual package >>>>> representing Xcode] >>>>> >>>>> Do you know if there is a double precision version too available via fink? >>>>> >>>>>> >>>>>> >>>> >>>> You might want to update your Xcode command line tools (the Xcode >>>> preferences has an option to do that). >>>> >>>> What exactly do you want a double precision version of? >>> >>> Gromacs. >>> >>> Seems it installs it automatically in the multi processor machine, but not >>> on my desktop. it's normally gromacs_d >>> >>> Thank you for your help! >>> >>>> >> >> Ah. > > This thread is very confusing. The user seems to have not synced his > Xcode.app and Command Line Tools for starters. > As for double precision, the gromacs build for both gromacs.info and > gromacs-mpi.info can't complete without doing > that. The cmake build is repeated twice (as is obvious by inspection of the > info files) with the default single > precision and then double precision (with the latter binaries suffixed with > _d). > >> >> I would think that it _should_ be building the same way on both >> machines. That's probably something to discuss further with the gromacs >> maintainer (cc'ed). >>
Valentina, could you please clarify the situation you described above. Can you provide the output of "dpkg -L gromacs" from the machine where you say you don't have double precision executables? -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ ------------------------------------------------------------------------------ Everyone hates slow websites. So do we. Make your web apps faster with AppDynamics Download AppDynamics Lite for free today: http://p.sf.net/sfu/appdyn_d2d_feb _______________________________________________ Fink-users mailing list [email protected] List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
