Dear Nikhil,

I think it is a very interesting exercise to see how a consensus might be reached on your work by both adding to and subtracting from the different perspectives. Thus, I agree with Stan that we are looking at instances of isomorphism at different levels, and this for me is entirely logical (;-). Levels of reality exist and the rules that apply in them are not identical, and this constitutes a discontinuity between them. Also, within a given level involving three elements, even if they all influence one another, it should be possible to decompose the interactions into those between A and B, the resultant of which interacts with C. This is Pedro's comment in somewhat different terms.

On the other hand, as I have argued elsewhere, the use of the term 'self-organization' does not bring any additional knowledge. It diverts attention from the dynamics of the different flows, which are also affected by such a multitude of external factors, actual and potential, that the process could equally well be called hetero-organization. Also, and I really just ask this as a question, how does the concept of hierarchy affect the analysis? If as you write there are different species involved in exchange networks across ascending levels, what would be important to know are the details of these exchanges. Here, the above discontinuity between levels seems to be replaced by a degree of continuity. Your statement implies to me interactions /between/ different levels, but are these interactions bi-directional reactions? How would the rates of forward and back reactions be related?

I look forward to your comments on the above which I assure you is intended to be constructive.

Best wishes,

Joseph



----- Original Message ----- From: "Pedro C. Marijuan" <pcmarijuan.i...@aragon.es>
To: <fis@listas.unizar.es>
Sent: Friday, November 27, 2015 1:39 PM
Subject: Re: [Fis] Sustainability through multilevel research: The Lifel, Deep Society Build-A-Thon - 1


Dear Nikhil and colleagues (Bob, Stan...),

Let me concur with Stan's arguments. I think you are working with original ideas about two different instances of self-organization in Nature where metabolic-energetic flows are modulated by third parties in order to maintain some maximum of stability in a very complex co-assemblage so that it may result compatible with the existing limitations of the global environment. It is sort of a fiscal agency or an energy police-body that keeps an overall adaptive order in the multifarious exchange of flows.

The two instances you describe are widely independent, in spite of the relative links existing (in the ecosphere, it is very difficult the complete independence). Forcing them into a hierarchy is not the best idea, in my opinion, as the two description are quite interesting, original, and advanced by themselves--particularly in order to land on the global problems of the economic order of our times. Connecting meaningfully with the path discussed by Bob and his colleagues requires quite a bit of further thinking. Economic organization is based finally on symmetry and symmetry breaking at different "levels" (just from the double-entry accounting of the agent to the collective market prices and valuation of stocks, to the financial coupling with the "real" economy). Like in the biological organization of information flows, there is a generalized dialectics of balances and modulations, of symmetry and symmetry breakings, yes, in some hierarchical framework. Unfortunately the information/symmetry topic is far from being properly developed as a "complexity engine", except maybe in physics, and we prefer indulging in independent disciplinary conceptualizations, preferably inspired in mechanics, that obfuscate understanding.

It is a rather difficult discussion... Further efforts from yours and your colleagues, and other parties in the list would be needed. From my part, this weekend I will re-read your papers and Bob's links. We cannot renounce to advance in this discussion.

All the best--Pedro


Nikhil Joshi wrote:
Dear Stan,
You raise a very interesting and important question.

Recent findings suggest that mycorrhiza could modulate the rate of assimilation of molecules (driven by changing rates of photosynthesis) across groups of plants by modulating the flow of phosphorous (from the subsoil sources) across competing autotrophic species. Such modulation alters the overall conversion of geochemical (molecular) resources into biomass. Hence the modulatory effects of mycorrhizal modulation are at the level of molecular flows between geo-cycles and autotrophs (level 1).

What is suggested here is that gut bacteria are involved in the modulation of rate of reproduction of cellular and multicellular species. Hence their effect is at a cellular level (level 2) Hence the activities of the two modulator systems are at two different scales- molecular and cellular. A multilevel view reveals a growing complexity in the species involved in exchange networks across ascending levels (compositional hierarchy) from molecules, to cells, multicellular species, and social Organization. A compositional hierarchy is also seen at each level in the emergence of community structure at each level. However, I agree that these observations do not constitute a complete description of the hierarchal relationships in these systems. The developing a formal hierarchical view would provide much clearer view of these systems and their interconnections. Given my limited knowledge of formal hierarchies, I would appreciate your assurance and views on this. Thanking you, Warm regards,
Nikhil
Sent from my iPhone
Nikhil Joshi


--
-------------------------------------------------
Pedro C. Marijuán
Grupo de Bioinformación / Bioinformation Group
Instituto Aragonés de Ciencias de la Salud
Centro de Investigación Biomédica de Aragón (CIBA)
Avda. San Juan Bosco, 13, planta X
50009 Zaragoza, Spain
Tfno. +34 976 71 3526 (& 6818)
pcmarijuan.i...@aragon.es
http://sites.google.com/site/pedrocmarijuan/
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