were these processed any differently? The .xdebug_tkmedit should be in pwd
wherever you ran it from.
Bruce
On Tue, 29 Aug 2006, Derin Cobia
wrote:
Kevin-
Yeah, either way. In my "infinite" wisdom I thought that scrolling slower
would help, but not so.
Nick-
I'm unable to locate a .xdebug_tkmedit file in either the freesurfer or
subjects directory. Would it be somewhere else? It looks like we're
using the 1.0-8178 Nvidia driver for our Quadro FX card, but their site
shows a 1.0-8762 as the latest. I'll see if we can update it today, maybe
that will help.
On the side... why are my intensity values "infinite" for the following
subject? I've briefly checked brainmask.mgz, and differing intensities
appear. Any ideas? Thanks.
-Derin
#--------------------------------------------
[EMAIL PROTECTED] WM Segmentation Mon Aug 28 04:00:48 CDT 2006
mri_segment brain.mgz wm.seg.mgz
doing initial intensity segmentation...
using local statistics to label ambiguous voxels...
computing class statistics for intensity windows...
WM: nan +- nan [100000.0 --> -100000.0]
GM: nan +- nan [100000.0 --> -100000.0]
mri_segment: class statistics not finite - check input volume!
Linux gizmo 2.6.9-11.ELsmp #1 SMP Wed Jun 8 17:54:20 CDT 2005 i686 i686
i386 GNU/Linux
recon-all exited with ERRORS at Mon Aug 28 04:00:54 CDT 2006
Hm, I can't reproduce this.
So, you load up a volume, and repeatedly press an arrow key to scroll
through the slices? Or hold the button down?
On Mon, Aug 28, 2006 at 11:16:49AM -0500, Derin Cobia wrote:
I've been experiencing some crashes/freezing using tkmedit lately, and
have been able to reproduce it pretty reliably. It occurs when I scroll
through the slices of the subject either using the arrows keys or
clicking
through on the toolbar. It happens when viewing a variety of volumes
(brainmask, T1, etc), and from a variety of perspectives (coronal,
sagittal, etc); it also happens on different subjects as well. This
occurs no matter what workstation I use in the lab (networked
environment). My X freezes up as well as the keyboard, but the mouse
doesn't. I used to be able to restart my X remotely, but now tkmedit
locks up so bad I have to reboot. Any ideas?
Dell Precision 670 Workstations
CentOS 4.1 (32-bit)
-------- freesurfer-Linux-centos4-stable-pub-v3.0.3 --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME /pkg/brainmap/freesurfer
FSFAST_HOME /pkg/brainmap/freesurfer/fsfast
SUBJECTS_DIR /disk/k2/freesurfer/neuromorph_v1_flash/
FUNCTIONALS_DIR /pkg/brainmap/freesurfer/sessions
MINC_BIN_DIR /pkg/brainmap/freesurfer/mni/bin
MINC_LIB_DIR /pkg/brainmap/freesurfer/mni/lib
PERL5LIB /pkg/brainmap/freesurfer/mni/lib/perl5/5.8.0
GSL_DIR /pkg/brainmap/freesurfer/lib/gsl
QTDIR /usr/lib/qt-3.3
TCLLIBPATH /pkg/brainmap/freesurfer/lib/tcltktixblt/lib
FSL_DIR /pkg/brainmap/freesurfer/fsl
[EMAIL PROTECTED] ~]$ which tkmedit
/pkg/brainmap/freesurfer/bin//tkmedit
cd /disk/k2/freesurfer/neuromorph_v1_flash/
Thanks in advance.
--
Kevin Teich
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