p.s. how are you visualizing it? This works fine for me:
mri_convert -rl rawavg.mgz brainmask.mgz brainmask_xformed.mgz
tkmedit -f rawavg.mgz -aux brainmask_xformed.mgz
then use alt-c to switch back and forth
Bruce
On Fri, 1
Sep 2006,
Frederick Klauschen wrote:
Hi Bruce,
(aim: transform fs format back to original file
format)
when I run the commands you suggested:
mri_convert -rl orig/001.mgz brainmask.mgz
brainmask_transformed.mgz
the backtransformed image is in the original
coordinate boundaries, but it is not a the same
position as the original data (see attached example).
Frederick
--- Bruce Fischl <[EMAIL PROTECTED]> wrote:
if your orig volume is in orig/001.mgz, then you can
do:
mri_convert -rl orig/001.mgz brainmask.mgz
brainmask_transformed.mgz
cheers,
Bruce
On Thu, 31 Aug
2006, tulu wrote:
__________________________________________________
Do You Yahoo!?
Tired of spam? Yahoo! Mail has the best spam protection around
http://mail.yahoo.com
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
