Yea, some siemens scanners/dicom servers produce dicom files with IMA
extensions, which fools our software into thinking it is the old ima
format.
doug
On Fri, 2 Feb 2007, Binyam Nardos wrote:
thanks Jenni .. I had to change my input file format to siemens_dicom although
they were IMAs. It seems to be working now.
Binyam
Binyam Nardos
Cognitive Rehabilitation Research Group
Washington University School of Medicine Box # 8505
4444 Forest Park Blvd
St. Louis, MO 63108
Office: (314) 454-7795
Fax: (314) 286-1601
The contents of this e-mail message and any attachments are intended solely for
the addressee(s) named in this message. This communication is intended to be
and to remain confidential and may be subject to applicable physician/patient
and/or work product privileges. If you are not the intended recipient of this
message, or if this message has been addressed to you in error, please
immediately alert the sender by reply e-mail and then delete this message and
its attachments.
-----Original Message-----
From: Jenni Pacheco [mailto:[EMAIL PROTECTED]
Sent: Fri 2/2/2007 10:40 AM
To: Binyam Nardos
Cc: Freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] converting from siemens IMA to mgz
Hi Binyam,
I think you need to give it the IMA file name, so something like:
mri_convert -it siemens -ot mgz 001/file.IMA 001.mgz
If that doesn't work there are other options we can try.
Jenni
On Fri, 2 Feb 2007, Binyam Nardos wrote:
Hi all,
I just loaded raw structural scans into one of my subject directories. They are
of siemens IMA format and I used the following command:
mri_convert -it siemens -ot mgz 001/ 001.mgz
I then got the following error:
reading from 001/...
ERROR: could not parse 001/
ERROR: siemensRead(): 001/
I tried finding similar problems in the threads but nothing yet.
Appreciate any help,
Binyam
Binyam Nardos
Cognitive Rehabilitation Research Group
Washington University School of Medicine Box # 8505
4444 Forest Park Blvd
St. Louis, MO 63108
Office: (314) 454-7795
Fax: (314) 286-1601
The contents of this e-mail message and any attachments are intended solely for
the addressee(s) named in this message. This communication is intended to be
and to remain confidential and may be subject to applicable physician/patient
and/or work product privileges. If you are not the intended recipient of this
message, or if this message has been addressed to you in error, please
immediately alert the sender by reply e-mail and then delete this message and
its attachments.
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
