Hi Kristine,
you can just run mri_cc directly if you want:
mri_cc -o aseg_with_cc.mgz $subject
cheers,
Bruce
On Tue, 22 Jan 2008
[EMAIL PROTECTED] wrote:
Hi
I have a dataset originally processed with the Autumn 2005 FS version
(2.2?). I know need wm segs, and in order to get this, I've tried to run
-cortribbon -cortparc -cortparc2 -aparc2aseg -wmparc
But the cc doesn't get labeled in the cortparc, and consequently (?) not
in the wmparc either.
I've also tried to rerun all of -autorecon3, but w/o difference.
When rerunning recon-all -all, it gets fixed, but I would like to keep as
much as possible as is, since I did lots of edits due to a temporal bias
field problem. I've edited the asegs in some instances, and that is not
kept by default.
Grateful for tips on how far down in the processing stream I need to go to
get correct wmparcs w/cc.
Thanks,
Kristine
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