-
Hi
FOrgot to attach the file of lh.cortex.label with my last email. Here it is.
My error message is the same as Sky's: see
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07271.html
Looked like there was no solution for it at the time (April 17th, 2008),
what about now please?
"mri_glmfit: could not parse 149955th line in
/home/wei/working/tmp/ThicknessTest/mas_average/label/lh.cortex.label"
here I have attached the file for you to have a look. Also, I got the
same error message while trying to load that file using tksurfer. I am
using your latest version: 4.0.3.
Many thanks and regards,
Wei Wen
#label , from subject ??
149955
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_and_S_occipital_inferior.label
<==
161841 -35.972 -80.938 -14.778 0.000000
161842 -36.025 -80.450 -14.925 0.000000
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161844 -36.369 -79.474 -15.497 0.000000
161865 -36.354 -78.002 -13.599 0.000000
161867 -36.528 -77.345 -13.903 0.000000
161868 -36.483 -78.158 -14.174 0.000000
161869 -36.548 -78.357 -14.657 0.000000
161870 -36.642 -78.700 -15.248 0.000000
161871 -36.608 -78.998 -15.795 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_and_S_transverse_frontopolar.label
<==
146036 -10.905 63.513 0.864 0.000000
146037 -10.311 63.771 0.461 0.000000
146038 -9.668 64.049 0.119 0.000000
146039 -9.118 63.990 1.468 0.000000
146040 -9.069 63.994 0.641 0.000000
146041 -9.142 64.220 -0.199 0.000000
146042 -8.662 64.313 -0.527 0.000000
146043 -8.242 64.305 -0.873 0.000000
146044 -7.830 64.180 -1.201 0.000000
146045 -7.555 63.686 -0.925 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_cingulate-Isthmus.label
<==
160127 -7.666 -50.039 7.988 0.000000
160128 -7.850 -50.539 7.248 0.000000
160129 -7.880 -51.416 7.358 0.000000
160130 -8.133 -51.249 7.034 0.000000
160131 -8.355 -51.022 6.870 0.000000
160132 -9.008 -51.423 6.749 0.000000
160146 -6.602 -51.928 9.675 0.000000
160147 -6.494 -52.915 9.655 0.000000
160148 -6.612 -52.723 9.311 0.000000
160149 -6.776 -52.479 9.052 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_cingulate-Main_part.label
<==
159387 -5.951 -52.105 18.145 0.000000
159388 -6.284 -52.819 17.433 0.000000
159389 -6.429 -53.666 16.722 0.000000
159390 -6.370 -55.133 16.645 0.000000
159391 -6.281 -54.872 16.312 0.000000
159392 -6.271 -54.615 15.956 0.000000
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159394 -5.294 -56.347 14.655 0.000000
160144 -6.665 -51.017 11.088 0.000000
160145 -6.548 -51.456 10.332 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_cuneus.label
<==
158506 -6.294 -97.747 2.503 0.000000
158524 -2.936 -100.625 3.200 0.000000
158525 -3.227 -100.934 2.843 0.000000
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158529 -3.922 -101.332 2.215 0.000000
158530 -4.401 -101.368 2.027 0.000000
158531 -4.958 -101.407 1.950 0.000000
158585 -9.034 -102.177 11.034 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_frontal_inf-Opercular_part.label
<==
154781 -52.413 22.664 11.459 0.000000
154782 -52.051 22.183 11.700 0.000000
154783 -51.689 21.756 11.910 0.000000
154784 -51.325 21.366 12.138 0.000000
154785 -50.704 21.338 11.787 0.000000
154786 -50.154 21.292 11.467 0.000000
154787 -49.583 21.259 11.249 0.000000
154788 -49.762 21.956 10.332 0.000000
154789 -49.346 21.604 10.704 0.000000
154790 -48.865 21.134 11.077 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_frontal_inf-Orbital_part.label
<==
141383 -46.227 32.825 -12.416 0.000000
141388 -45.129 32.120 -13.124 0.000000
153661 -39.115 25.081 -9.099 0.000000
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153663 -38.597 24.673 -9.991 0.000000
153664 -40.230 24.202 -10.845 0.000000
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153666 -38.241 24.564 -10.452 0.000000
153667 -37.836 24.523 -10.870 0.000000
155046 -35.277 29.256 -3.550 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_frontal_inf-Triangular_part.label
<==
154945 -44.113 31.256 1.242 0.000000
154946 -43.499 31.123 1.883 0.000000
154947 -42.707 31.117 2.227 0.000000
154948 -41.944 31.094 2.505 0.000000
154949 -41.224 31.064 2.790 0.000000
154951 -41.059 31.215 2.389 0.000000
154952 -40.487 31.021 3.135 0.000000
154953 -39.739 31.033 3.487 0.000000
154954 -38.975 31.040 3.809 0.000000
154956 -46.567 33.022 -5.832 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_frontal_middle.label
<==
152192 -25.422 43.661 36.176 0.000000
152193 -24.903 43.734 36.735 0.000000
152194 -25.629 42.573 36.984 0.000000
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152197 -23.587 43.608 37.181 0.000000
152416 -30.374 10.035 55.942 0.000000
152417 -30.087 10.331 55.078 0.000000
154632 -42.273 29.883 22.126 0.000000
154633 -41.890 29.278 22.136 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_frontal_superior.label
<==
153256 -9.616 39.556 28.515 0.000000
154301 -5.779 17.835 -13.374 0.000000
154303 -6.088 18.430 -12.378 0.000000
154310 -6.408 24.289 -11.686 0.000000
154311 -6.152 23.606 -11.718 0.000000
154312 -5.731 23.789 -10.621 0.000000
154313 -5.830 23.332 -11.127 0.000000
154314 -5.895 22.878 -11.642 0.000000
154315 -5.730 22.160 -11.492 0.000000
154316 -5.749 21.513 -11.279 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_frontomarginal.label
<==
154002 -14.694 59.373 -14.691 0.000000
154003 -15.589 59.375 -14.496 0.000000
154004 -16.414 59.275 -14.199 0.000000
154005 -17.193 59.023 -13.804 0.000000
154006 -16.831 57.484 -13.989 0.000000
154007 -17.411 58.133 -13.734 0.000000
154008 -17.989 58.642 -13.362 0.000000
154009 -18.862 58.195 -12.951 0.000000
154010 -19.776 57.756 -12.603 0.000000
154011 -20.579 57.218 -12.133 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_insular_long.label
<==
155461 -37.296 -16.269 11.954 0.000000
155462 -37.344 -17.034 11.741 0.000000
155463 -36.932 -17.759 11.334 0.000000
155464 -36.209 -18.408 10.947 0.000000
155465 -35.496 -18.627 9.625 0.000000
155466 -35.558 -18.810 10.111 0.000000
155467 -35.396 -19.054 10.541 0.000000
160277 -34.093 6.181 -12.864 0.000000
160361 -34.922 4.007 -15.335 0.000000
160364 -34.994 3.723 -16.023 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_insular_short.label
<==
160274 -33.550 8.313 -11.801 0.000000
160275 -33.737 7.624 -12.140 0.000000
160276 -33.911 6.939 -12.486 0.000000
160349 -30.434 11.355 -12.792 0.000000
160350 -31.068 10.711 -12.719 0.000000
160351 -31.610 10.009 -12.625 0.000000
160352 -32.132 9.185 -12.492 0.000000
160354 -32.332 8.423 -12.664 0.000000
160355 -32.722 8.315 -12.462 0.000000
160356 -33.242 7.323 -12.647 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_occipital_middle.label
<==
161700 -39.141 -88.073 -4.667 0.000000
161701 -38.700 -88.311 -5.199 0.000000
161702 -38.261 -88.651 -5.792 0.000000
161703 -37.928 -89.040 -6.405 0.000000
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161706 -37.644 -89.489 -7.112 0.000000
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161708 -37.074 -90.471 -8.686 0.000000
161709 -36.623 -90.988 -9.407 0.000000
161710 -36.697 -90.792 -9.708 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_occipital_superior.label
<==
158580 -9.090 -100.791 12.967 0.000000
158581 -9.933 -101.045 13.998 0.000000
158582 -9.441 -101.262 13.235 0.000000
158583 -8.980 -101.330 12.380 0.000000
158587 -12.304 -101.274 13.583 0.000000
158588 -11.736 -101.674 13.045 0.000000
158589 -11.129 -102.092 12.457 0.000000
158590 -11.892 -101.996 11.405 0.000000
158591 -11.216 -102.226 11.676 0.000000
158592 -10.547 -102.345 11.876 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_occipit-temp_lat-Or_fusiform.label
<==
163062 -31.296 -40.929 -19.124 0.000000
163063 -30.691 -40.170 -19.804 0.000000
163064 -31.316 -40.303 -19.532 0.000000
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163069 -31.615 -37.497 -21.873 0.000000
163070 -32.034 -37.515 -21.593 0.000000
163071 -32.311 -37.705 -21.114 0.000000
163072 -33.188 -36.471 -21.657 0.000000
163073 -32.970 -37.124 -21.293 0.000000
163074 -32.852 -37.923 -20.785 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_occipit-temp_med-Lingual_part.label
<==
162860 -13.707 -67.162 -4.281 0.000000
162861 -13.194 -66.609 -4.280 0.000000
162862 -13.908 -65.621 -4.484 0.000000
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162866 -15.837 -63.549 -5.293 0.000000
162867 -15.530 -62.971 -5.455 0.000000
162868 -16.127 -62.025 -5.698 0.000000
162869 -16.693 -61.082 -5.931 0.000000
162870 -17.355 -60.080 -6.184 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_occipit-temp_med-Parahippocampal_part.label
<==
163815 -29.152 -24.285 -26.093 0.000000
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163817 -30.317 -24.113 -25.668 0.000000
163818 -31.014 -23.978 -25.404 0.000000
163819 -31.072 -24.627 -24.149 0.000000
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163823 -32.573 -23.612 -24.753 0.000000
163824 -33.263 -23.370 -24.428 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_orbital.label
<==
160491 -15.787 14.839 -19.651 0.000000
160492 -15.823 14.211 -20.087 0.000000
160493 -15.983 13.627 -20.440 0.000000
160494 -16.567 13.152 -19.985 0.000000
160495 -17.232 12.897 -19.459 0.000000
160496 -17.931 12.658 -18.897 0.000000
160497 -18.178 12.857 -17.546 0.000000
160498 -18.433 12.629 -17.904 0.000000
160499 -18.532 12.474 -18.251 0.000000
160500 -19.198 12.177 -17.662 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_paracentral.label
<==
151909 -12.324 -39.858 57.645 0.000000
151958 -14.326 -45.978 63.929 0.000000
152012 -13.246 -43.222 71.272 0.000000
152013 -13.360 -43.948 71.080 0.000000
152014 -13.363 -44.678 70.857 0.000000
152015 -13.274 -45.058 71.360 0.000000
152016 -13.249 -45.164 70.968 0.000000
152017 -13.310 -45.388 70.599 0.000000
152018 -13.162 -46.002 70.328 0.000000
152021 -13.574 -46.866 71.266 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_parietal_inferior-Angular_part.label
<==
157658 -31.739 -72.258 40.566 0.000000
157659 -31.308 -72.028 40.581 0.000000
157660 -30.919 -71.806 40.629 0.000000
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157662 -30.475 -72.232 40.707 0.000000
157663 -30.536 -71.635 40.642 0.000000
157664 -30.112 -71.567 40.598 0.000000
157665 -29.621 -71.585 40.458 0.000000
157667 -30.424 -74.680 38.481 0.000000
157668 -30.083 -74.091 38.789 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_parietal_inferior-Supramarginal_part.label
<==
156224 -50.932 -41.575 30.020 0.000000
156225 -51.139 -42.024 30.465 0.000000
156226 -50.884 -42.744 30.428 0.000000
156227 -50.709 -43.485 30.283 0.000000
156299 -61.927 -48.839 16.785 0.000000
156300 -62.210 -49.269 16.276 0.000000
156301 -62.107 -48.666 15.766 0.000000
156302 -62.311 -49.144 15.845 0.000000
156303 -62.424 -49.695 15.777 0.000000
156304 -62.501 -50.055 15.246 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_parietal_superior.label
<==
157654 -32.037 -74.239 41.725 0.000000
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157673 -29.245 -72.550 39.581 0.000000
157674 -29.089 -72.027 39.757 0.000000
157675 -28.958 -71.477 39.839 0.000000
157676 -28.737 -71.354 39.410 0.000000
157677 -28.571 -71.186 38.977 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_postcentral.label
<==
151049 -34.812 -35.969 59.367 0.000000
151050 -34.255 -35.839 59.511 0.000000
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151053 -33.789 -35.671 59.724 0.000000
151054 -33.178 -35.577 59.872 0.000000
151055 -32.570 -35.453 59.863 0.000000
151056 -31.977 -35.308 59.982 0.000000
151057 -31.485 -35.309 59.084 0.000000
151058 -30.900 -35.369 58.281 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_precentral.label
<==
149528 -46.454 -2.022 46.232 0.000000
149529 -47.127 -2.379 46.312 0.000000
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151715 -12.219 -19.599 74.362 0.000000
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151717 -11.379 -19.343 74.544 0.000000
151718 -11.241 -20.346 75.109 0.000000
151719 -11.087 -19.704 74.930 0.000000
151770 -11.498 -29.188 69.421 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_precuneus.label
<==
160151 -7.440 -53.342 8.462 0.000000
160152 -7.947 -53.640 8.473 0.000000
160153 -6.817 -55.811 9.287 0.000000
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160158 -7.650 -54.843 9.016 0.000000
160159 -7.904 -54.519 8.891 0.000000
160160 -8.197 -54.166 8.800 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_rectus.label
<==
154278 -3.310 24.714 -21.884 0.000000
154279 -3.346 23.836 -21.714 0.000000
154280 -3.340 22.938 -21.544 0.000000
154281 -3.384 22.049 -21.387 0.000000
154282 -3.674 21.707 -20.842 0.000000
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154284 -4.592 20.675 -19.479 0.000000
154285 -4.966 21.992 -19.132 0.000000
154286 -5.028 21.066 -18.948 0.000000
154287 -5.069 20.165 -18.667 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_subcallosal.label
<==
154341 -5.436 14.675 -6.497 0.000000
154342 -5.156 14.283 -5.914 0.000000
154343 -4.908 13.957 -5.389 0.000000
154345 -5.655 17.995 -5.318 0.000000
154346 -5.460 17.221 -5.109 0.000000
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154349 -5.013 16.255 -4.313 0.000000
154350 -5.046 15.726 -4.738 0.000000
154351 -4.824 14.954 -4.581 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_subcentral.label
<==
154371 -57.139 2.135 14.285 0.000000
154372 -57.352 2.095 13.715 0.000000
154373 -57.475 1.988 13.120 0.000000
154374 -57.317 2.528 12.914 0.000000
154375 -57.505 2.242 12.720 0.000000
154376 -57.496 1.851 12.547 0.000000
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154378 -57.334 1.405 11.622 0.000000
154379 -57.114 1.184 11.172 0.000000
154380 -57.146 1.418 10.705 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_temporal_inferior.label
<==
162233 -49.811 -41.326 -22.085 0.000000
162234 -49.264 -41.706 -22.038 0.000000
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162236 -48.876 -41.544 -21.816 0.000000
162237 -48.796 -42.227 -22.073 0.000000
162238 -48.335 -42.805 -21.627 0.000000
162250 -49.746 -33.660 -22.384 0.000000
162251 -49.384 -34.446 -21.821 0.000000
162252 -49.197 -35.143 -21.255 0.000000
162255 -48.991 -35.959 -20.743 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_temporal_middle.label
<==
161913 -54.636 -56.643 -5.320 0.000000
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161915 -53.911 -58.454 -5.439 0.000000
161926 -55.968 -48.455 -8.657 0.000000
161927 -55.427 -49.291 -8.621 0.000000
161980 -61.206 -39.319 -15.355 0.000000
161981 -60.807 -40.084 -15.357 0.000000
161982 -60.447 -40.926 -15.488 0.000000
161983 -61.147 -40.871 -16.264 0.000000
161984 -60.766 -41.389 -15.830 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_temp_sup-G_temp_transv_and_interm_S.label
<==
155301 -54.461 -6.481 -1.419 0.000000
155302 -54.601 -5.728 -1.751 0.000000
155303 -53.520 -6.985 -1.982 0.000000
155304 -54.089 -5.977 -2.017 0.000000
155305 -54.766 -4.884 -2.070 0.000000
155311 -53.557 -3.709 -3.995 0.000000
155312 -53.003 -5.545 -3.696 0.000000
155313 -53.069 -4.836 -4.044 0.000000
155314 -53.097 -4.189 -4.408 0.000000
155315 -52.712 -4.722 -4.885 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.G_temp_sup-Lateral_aspect.label
<==
161315 -48.550 3.572 -29.524 0.000000
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_pericallosal.label
<==
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_postcentral.label
<==
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_precentral-Inferior-part.label
<==
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_precentral-Superior-part.label
<==
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_subcentral_ant.label
<==
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_subcentral_post.label
<==
146688 -53.847 -18.496 19.380 0.000000
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146697 -53.015 -21.617 22.437 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_suborbital.label
<==
154297 -5.810 19.952 -15.510 0.000000
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_subparietal.label
<==
159358 -8.820 -55.466 22.938 0.000000
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==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_temporal_inferior.label
<==
161979 -47.197 -62.477 -10.085 0.000000
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162067 -43.192 -61.663 -7.902 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_temporal_superior.label
<==
161249 -49.435 -1.719 -24.122 0.000000
161250 -50.069 -2.062 -24.713 0.000000
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161332 -52.160 -2.284 -25.497 0.000000
==>
/home/wei/working/tmp/ThicknessTest/mas_average/make_cortex_label.tmp.9823/lh.S_temporal_transverse.label
<==
155216 -54.314 -17.750 3.959 0.000000
155217 -54.676 -17.801 3.533 0.000000
155218 -55.072 -17.860 3.168 0.000000
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155223 -57.581 -16.235 2.188 0.000000
155224 -58.102 -16.461 2.045 0.000000
155225 -58.938 -16.194 1.979 0.000000
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