You might have to delete the old cortex.label
Wen, Wei wrote:
-
Hi Doug,
I ran make_cortex_label (that went through) for my average subject
which was mas_average and tried qdec again but still the same message:
mri_glmfit: could not parse 149955th line in
/home/wei/working/tmp/ThicknessTest/mas_average/label/lh.cortex.label
ERROR reading
/home/wei/working/tmp/ThicknessTest/mas_average/label/lh.cortex.label
Error in Analyze: command failed: mri_glmfit --y
/home/wei/working/tmp/ThicknessTest/qdec/lh_thickness_sex_10/y.mgh
--fsgd
/home/wei/working/tmp/ThicknessTest/qdec/lh_thickness_sex_10/qdec.fsgd
--glmdir /home/wei/working/tmp/ThicknessTest/qdec/lh_thickness_sex_10
--surf mas_average lh --label
/home/wei/working/tmp/ThicknessTest/mas_average/label/lh.cortex.label
--C
/home/wei/working/tmp/ThicknessTest/qdec/lh_thickness_sex_10/contrasts/Avg-Intercept-thickness.mat
--C
/home/wei/working/tmp/ThicknessTest/qdec/lh_thickness_sex_10/contrasts/Diff-Female-Male-Intercept-thickness.mat
I am now rerunning the average step and see what will happen next.
Wei Wen
Doug Greve wrote:
I think you can just run make_cortex_label for your average subject.
Wen, Wei wrote:
-
Thanks Doug.
Do I need to rerun everything or at least rerun the average step? I
went straight into qdec but the same error message appears (after
replacing the old mri-mergelabels with the one just downloaded.
Wei Wen
Doug Greve wrote:
This may be a problem with the way that the unix tail command is
implemented in newer OSs. Try copying this file:
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_mergelabels
into $FREESURFER_HOME/bin
doug
Wen, Wei wrote:
-
Hi
FOrgot to attach the file of lh.cortex.label with my last email.
Here it is.
My error message is the same as Sky's: see
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg07271.html
Looked like there was no solution for it at the time (April 17th,
2008), what about now please?
"mri_glmfit: could not parse 149955th line in
/home/wei/working/tmp/ThicknessTest/mas_average/label/lh.cortex.label"
here I have attached the file for you to have a look. Also, I got
the same error message while trying to load that file using
tksurfer. I am using your latest version: 4.0.3.
Many thanks and regards,
Wei Wen
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