Hi, I have a problem using mri_aparc2aseg with a custom annotations containing labels created manually in tksurfer and exported.
Basically, I would like to end up with a volume file similar as aparc+aseg.mgz but containing only a strip of a cortex corresponding to a label defined using tksurfer. The command I used is following: mri_aparc2aseg --s fsaverage --o labels.mgz --anot labels The command passes fine, but what I get is 2000 for all the cortical voxels, while I expected zeros for all the cortical voxels, except for those corresponding to the label. Any help on is greatly appreciated. Thanks, Martin _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
