So is the problem that cortex is 2000 every where including your label or is it that it is 2000 away from you label and you want it to be 0? Note that unlabeled cortical voxels will come out at 2000 (for rh) and 1000 (for lh). Your labels should come out at 1000+N or 2000+N
doug Martin Kavec wrote: > Hi, > > I have a problem using mri_aparc2aseg with a custom annotations containing > labels created manually in tksurfer and exported. > > Basically, I would like to end up with a volume file similar as > aparc+aseg.mgz > but containing only a strip of a cortex corresponding to a label defined > using > tksurfer. The command I used is following: > > mri_aparc2aseg --s fsaverage --o labels.mgz --anot labels > > The command passes fine, but what I get is 2000 for all the cortical voxels, > while I expected zeros for all the cortical voxels, except for those > corresponding to the label. Any help on is greatly appreciated. > > Thanks, > > Martin > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
