Chindhuri, Is the path to spm2 added in your startup.m file and are you using matlab 7.1 (required by spm2)?
doug Chindhuri Selvadurai wrote: > Hello, > > I am getting the same error that was discussed in the attached thread, > however, the addition of the path line did not work for me. > > I am also not sure if we should be using spm5 since all in the past we > have been using spm2. It presents this error when running under my name, > but not for other users. > > Any help would be appreciated! > > Thanks, > Chindhuri > > > ________________________________________________ > Re: [Freesurfer] spmregister error > > Douglas N Greve > Fri, 30 Jul 2010 09:58:18 -0700 > > Yes, that should work. > > doug > > Adam Nitenson wrote: > >> Hi Sandra, >> >> I just had this same problem about a week ago. The solution which >> worked for me was adding the following line of text into the startup.m >> file in your matlab folder: >> >> path(path,'/usr/pubsw/common/spm/spm5'); >> >> I'm not sure it matter exactly where you put it. I put mine in the last >> row in the FreeSurfer FAST section, under the line beginning with "clear". >> >> Hope that helps! >> >> -Adam >> >> >> >> >> >>> Hello, >>> >>> When running spmregister-sess (standard environment was sourced) I >>> encountered this error: >>> >>> ERROR: matlab exited with errors >>> ERROR: cannot find spm_coreg.m. Make sure that the SPM >>> package is in your matlab path (check ~/matlab/startup) >>> ERROR: spm_coreg >>> >>> ERROR: spmregister failed >>> __________________________________________________________ >>> >>> Our information: >>> >>> >>> FREESURFER_HOME: /usr/local/freesurfer/stable4 >>> >>> Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.5.0-20100311 >>> >>> RedHat release: CentOS release 5.3 (Final) >>> >>> Kernel info: Linux 2.6.18-128.7.1.el5 x86_64 >>> >>> NMR Center info (/space/freesurfer exists): >>> >>> machine: purkinje >>> >>> SUBJECTS_DIR: /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons >>> >>> PWD: /cluster/ablood/1/DMRF_ASL >>> >>> ssh purkinje >>> setenv SUBJECTS_DIR /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons >>> cd /cluster/ablood/1/DMRF_ASL >>> __________________________________________________________________ >>> >>> >>> We appreciate any help you can give us!! >>> >>> Thanks, >>> >>> Sandra >>> Mood and Motor Control Laboratory >>> Athinoula Martinos Center for Biomedical Imaging >>> Massachusetts General Hospital >>> 120 6th St. >>> Charlestown, MA 02129 >>> Tel: 617-643-6245 >>> Fax: 617-726-1351 >>> Email: swoodm...@partners.org >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> Adam Nitenson, B.S. >> Brain Genomics Lab >> Massachusetts General Hospital >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
