Two suggestions: 1. Can you temporarily change the spm path to spm5 to see if that fixes the problem? 2. Can you send me your command line, directory you ran it from, SUBJECTS_DIR, and terminal output?
doug Chindhuri Selvadurai wrote: > The path to spm2 was not originally in my startup.m file, but even when I > added it, it didn't work. > > I am using 7.8, but I tried to change my cshrc file back to 7.1 however, > once I ran the script, it was actually running 7.4 > > Thank you, > Chindhuri > > > >> Chindhuri, >> >> Is the path to spm2 added in your startup.m file and are you using >> > matlab 7.1 (required by spm2)? > >> doug >> >> Chindhuri Selvadurai wrote: >> >>> Hello, >>> I am getting the same error that was discussed in the attached thread, >>> > however, the addition of the path line did not work for me. > >>> I am also not sure if we should be using spm5 since all in the past we >>> > have been using spm2. It presents this error when running under my > name, > >>> but not for other users. >>> Any help would be appreciated! >>> Thanks, >>> Chindhuri >>> ________________________________________________ >>> Re: [Freesurfer] spmregister error >>> Douglas N Greve >>> Fri, 30 Jul 2010 09:58:18 -0700 >>> Yes, that should work. >>> doug >>> Adam Nitenson wrote: >>> >>>> Hi Sandra, >>>> I just had this same problem about a week ago. The solution which >>>> worked for me was adding the following line of text into the startup.m >>>> > file in your matlab folder: > >>>> path(path,'/usr/pubsw/common/spm/spm5'); >>>> I'm not sure it matter exactly where you put it. I put mine in the >>>> > last > >>>> row in the FreeSurfer FAST section, under the line beginning with >>>> > "clear". > >>>> Hope that helps! >>>> -Adam >>>> >>>>> Hello, >>>>> When running spmregister-sess (standard environment was sourced) I >>>>> > encountered this error: > >>>>> ERROR: matlab exited with errors >>>>> ERROR: cannot find spm_coreg.m. Make sure that the SPM >>>>> package is in your matlab path (check ~/matlab/startup) >>>>> ERROR: spm_coreg >>>>> ERROR: spmregister failed >>>>> __________________________________________________________ >>>>> Our information: >>>>> FREESURFER_HOME: /usr/local/freesurfer/stable4 >>>>> Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.5.0-20100311 >>>>> > RedHat release: CentOS release 5.3 (Final) > >>>>> Kernel info: Linux 2.6.18-128.7.1.el5 x86_64 >>>>> NMR Center info (/space/freesurfer exists): >>>>> machine: purkinje >>>>> SUBJECTS_DIR: /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons >>>>> PWD: /cluster/ablood/1/DMRF_ASL >>>>> ssh purkinje >>>>> setenv SUBJECTS_DIR /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons cd >>>>> > /cluster/ablood/1/DMRF_ASL > >>>>> __________________________________________________________________ We >>>>> > appreciate any help you can give us!! > >>>>> Thanks, >>>>> Sandra >>>>> Mood and Motor Control Laboratory >>>>> Athinoula Martinos Center for Biomedical Imaging >>>>> Massachusetts General Hospital >>>>> 120 6th St. >>>>> Charlestown, MA 02129 >>>>> Tel: 617-643-6245 >>>>> Fax: 617-726-1351 >>>>> Email: swoodm...@partners.org >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>> Adam Nitenson, B.S. >>>> Brain Genomics Lab >>>> Massachusetts General Hospital >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> >> >> > > > Best, > > Chindhuri Selvadurai > > Psychiatric Neuroimaging, Manoach Lab > Martinos Center for Biomedical Imaging > Massachusetts General Hospital > Phone: (617)726-0307 > > > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
