The path to spm2 was not originally in my startup.m file, but even when I added it, it didn't work.
I am using 7.8, but I tried to change my cshrc file back to 7.1 however, once I ran the script, it was actually running 7.4 Thank you, Chindhuri > Chindhuri, > > Is the path to spm2 added in your startup.m file and are you using matlab 7.1 (required by spm2)? > > doug > > Chindhuri Selvadurai wrote: >> Hello, >> I am getting the same error that was discussed in the attached thread, however, the addition of the path line did not work for me. >> I am also not sure if we should be using spm5 since all in the past we have been using spm2. It presents this error when running under my name, >> but not for other users. >> Any help would be appreciated! >> Thanks, >> Chindhuri >> ________________________________________________ >> Re: [Freesurfer] spmregister error >> Douglas N Greve >> Fri, 30 Jul 2010 09:58:18 -0700 >> Yes, that should work. >> doug >> Adam Nitenson wrote: >>> Hi Sandra, >>> I just had this same problem about a week ago. The solution which >>> worked for me was adding the following line of text into the startup.m file in your matlab folder: >>> path(path,'/usr/pubsw/common/spm/spm5'); >>> I'm not sure it matter exactly where you put it. I put mine in the last >>> row in the FreeSurfer FAST section, under the line beginning with "clear". >>> Hope that helps! >>> -Adam >>>> Hello, >>>> When running spmregister-sess (standard environment was sourced) I encountered this error: >>>> ERROR: matlab exited with errors >>>> ERROR: cannot find spm_coreg.m. Make sure that the SPM >>>> package is in your matlab path (check ~/matlab/startup) >>>> ERROR: spm_coreg >>>> ERROR: spmregister failed >>>> __________________________________________________________ >>>> Our information: >>>> FREESURFER_HOME: /usr/local/freesurfer/stable4 >>>> Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.5.0-20100311 RedHat release: CentOS release 5.3 (Final) >>>> Kernel info: Linux 2.6.18-128.7.1.el5 x86_64 >>>> NMR Center info (/space/freesurfer exists): >>>> machine: purkinje >>>> SUBJECTS_DIR: /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons >>>> PWD: /cluster/ablood/1/DMRF_ASL >>>> ssh purkinje >>>> setenv SUBJECTS_DIR /cluster/ablood/1/DMRF_ASL/DMRF_ASL_recons cd /cluster/ablood/1/DMRF_ASL >>>> __________________________________________________________________ We appreciate any help you can give us!! >>>> Thanks, >>>> Sandra >>>> Mood and Motor Control Laboratory >>>> Athinoula Martinos Center for Biomedical Imaging >>>> Massachusetts General Hospital >>>> 120 6th St. >>>> Charlestown, MA 02129 >>>> Tel: 617-643-6245 >>>> Fax: 617-726-1351 >>>> Email: swoodm...@partners.org >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> Adam Nitenson, B.S. >>> Brain Genomics Lab >>> Massachusetts General Hospital >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > > Best, Chindhuri Selvadurai Psychiatric Neuroimaging, Manoach Lab Martinos Center for Biomedical Imaging Massachusetts General Hospital Phone: (617)726-0307 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
