Hi Aya, you should be able to convert our segmentations to Nifti, which I assume Brainvoyager can read. You can load any of our volumes into matlab with either MRIread.m or load_mgh.m and go from there.
cheers Bruce On Wed, 27 Oct 2010, Aya Ben Yakov wrote: > Hi > > I used FreeSurfer to automatically segment subcortical structures, and I > would now like to transfer the data to Matlab. I am looking for a way to load > the coordinates of all structures (or, if it isn't possible, for each > structure, by its number) to Matlab, in Talairach coordinates. Is this > possible? If so - how can it be done? > > I use BrainVoyager, not FSL, for analysis, and I would like to somehow use > the segmentation from FreeSurfer for analysis in Matlab, in combination with > data I have from BrainVoyager (the functional data). I don't necessarily need > talairach coordinates, but otherwise I'm not sure how it would be possible to > convert between FreeSurfer and BrainVoyager. > > Any suggestions? > Thanks! > Aya > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
