I'm also interested in these segmentations for analysis in Matlab. In particular, which volumes should be loaded to get the coordinates of the segmentations?
I assume the segmentation volumes are just indices (all voxel belonging to the same segment are assigned the same unique index), correct ? --- Sincerly, Dr. Ørjan Bergmann On Wed, Oct 27, 2010 at 14:25, Bruce Fischl <fis...@nmr.mgh.harvard.edu>wrote: > Hi Aya, > > you should be able to convert our segmentations to Nifti, which I assume > Brainvoyager can read. You can load any of our volumes into matlab with > either MRIread.m or load_mgh.m and go from there. > > cheers > Bruce > > > On Wed, 27 Oct 2010, Aya Ben Yakov wrote: > > > Hi > > > > I used FreeSurfer to automatically segment subcortical structures, and I > would now like to transfer the data to Matlab. I am looking for a way to > load the coordinates of all structures (or, if it isn't possible, for each > structure, by its number) to Matlab, in Talairach coordinates. Is this > possible? If so - how can it be done? > > > > I use BrainVoyager, not FSL, for analysis, and I would like to somehow > use the segmentation from FreeSurfer for analysis in Matlab, in combination > with data I have from BrainVoyager (the functional data). I don't > necessarily need talairach coordinates, but otherwise I'm not sure how it > would be possible to convert between FreeSurfer and BrainVoyager. > > > > Any suggestions? > > Thanks! > > Aya > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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