Hi Angela
Doug as been away and this is really his domain. If you haven't gotten an
answer in a week so please repost one more time
Bruce
On Dec 29, 2010, at 5:35 AM, angela.fav...@unipd.it wrote:
> Dear all,
> I have not received any advice about this point. Can somebody help me?
> thank you!
>
> I followed the instructions found in Freesurfer tutorials ('cortical
> thickness of a volume-defined ROI').
> However, in the point 4 of the procedure I am not able to change the
> --reshape default. My run is:
>
> mri_surf2surf --s subj001 --trgsubject fsaverage --hemi rh --sval
> rh.thickness --tval rh.thickness.fsaverage.mgh --reshape-factor 7
>
> but it continues to create (like default) a reshape with 6.
>
> For this reason, I think, the following command:
> mri_segstats --seg $SUBJECTS_DIR/rh.fsaverage.mask21.mgh --in
> rh.thickness.fsaverage.mgh --sum segstats-mask21.txt
>
> give:
>
> ERROR: dimension mismatch between input volume and seg
> input 27307 1 6
> seg 23406 1 7
>
> What can I do to solve this problem?
>
> Thank you for your help!
>
> Angela
>
>
>
> Angela Favaro, MD, PhD, MSc
> Psychiatric Clinic
> Department of Neurosciences
> via Giustiniani 3
> 35128 Padova
> Italy
>
>
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>
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