Each label should be named according to the region it covers. Is that not enough? You can get more info from the Desikan paper.
doug Ingalhalikar, Madhura wrote: > Dear Douglas, > Thank you. That helped. Following the earlier question, mri_annotation2label > using the aparc.annot file ( Desikan atlas) gives me 35 labels in one > hemisphere. Is there a list / look up table to know what each label is? So > that based on what it is I can merge/edit or remove the ones I do not need. > > Thanks for answering my questions, > Madhura > > -----Original Message----- > From: Douglas N Greve [mailto:[email protected]] > Sent: Wed 1/5/2011 3:04 PM > To: Ingalhalikar, Madhura > Cc: [email protected] > Subject: Re: [Freesurfer] .label file for each ROI? > > you can use mri_annotation2label to convert the annotations to labels. > You can use mri_cor2label to convert a segmentation to a label (requires > you run it once for each label). > > doug > > Ingalhalikar, Madhura wrote: > >> Hi, >> I am trying to implement FSL and freesurfer to compute structural adjacency >> matrix. The webpage >> http://www.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html has been a major help. I >> just have one question. >> When I use probtrackx for fiber tracking, I have to seed the cortical ROI's >> and subcortical structres one by one. In this case, how can I create a >> .label file for each cortical and subcortical ROI;s ? >> >> Thanks for your help, >> >> Madhura >> >> >> The information contained in this e-mail message is intended only for the >> personal and confidential use of the recipient(s) named above. If the reader >> of this message is not the intended recipient or an agent responsible for >> delivering it to the intended recipient, you are hereby notified that you >> have received this document in error and that any review, dissemination, >> distribution, or copying of this message is strictly prohibited. If you have >> received this communication in error, please notify us immediately by >> e-mail, and delete the original message. >> >> _______________________________________________ >> Freesurfer mailing list >> [email protected] >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
