you can use mri_annotation2label to convert the annotations to labels. You can use mri_cor2label to convert a segmentation to a label (requires you run it once for each label).
doug Ingalhalikar, Madhura wrote: > Hi, > I am trying to implement FSL and freesurfer to compute structural adjacency > matrix. The webpage > http://www.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html has been a major help. I > just have one question. > When I use probtrackx for fiber tracking, I have to seed the cortical ROI's > and subcortical structres one by one. In this case, how can I create a .label > file for each cortical and subcortical ROI;s ? > > Thanks for your help, > > Madhura > > > The information contained in this e-mail message is intended only for the > personal and confidential use of the recipient(s) named above. If the reader > of this message is not the intended recipient or an agent responsible for > delivering it to the intended recipient, you are hereby notified that you > have received this document in error and that any review, dissemination, > distribution, or copying of this message is strictly prohibited. If you have > received this communication in error, please notify us immediately by e-mail, > and delete the original message. > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
