I get a file-not-found to that link, so I can't check it out. But, yes, you should just be able to use bbregister passing it the low-b as the template (or whatever you used at the target for motion correction). and specifying --bold or --t2.
doug Lena Palaniyappan wrote: > Dear Doug & others > > > The FSL page on fa to freesurfer registration ( > http://www.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html) > <http://www.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html%29> contain info > that uses tkregister2. > > > > To determine freesurfer_to_fa space registration file, do we need to > go through the freesurfer_to_struc and then struc_to_fa rooutine given > in fsl pages.? > > I wonder if the registration can be done using the bbregister currently. > > If that is the case how to get the fsl-type registration file? > tkregister2 had an option for this but it is not working with bbregister > > Cheers > Lena > _______________________________________________________ > *Lena Palaniyappan > *Clinical Lecturer & Honorary StR | Division of Psychiatry ( > University of Nottingham) > South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH > > > This message and any attachment are intended solely for the addressee > and may contain confidential information. If you have received this > message in error, please send it back to me, and immediately delete > it. Please do not use, copy or disclose the information contained in > this message or in any attachment. Any views or opinions expressed by > the author of this email do not necessarily reflect the views of the > University of Nottingham. > > This message has been checked for viruses but the contents of an > attachment may still contain software viruses which could damage your > computer system: you are advised to perform your own checks. Email > communications with the University of Nottingham may be monitored as > permitted by UK legislation. > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
