Hi Doug, This reminds me: in the dt_recon script, when bbregister is used, the gradient descent tolerance is changed (the command line includes --tol1d 1e-3 ).
I was just wondering why this happens. Thanks! Mike On Tue, Jan 25, 2011 at 1:31 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>wrote: > I get a file-not-found to that link, so I can't check it out. But, yes, > you should just be able to use bbregister passing it the low-b as the > template (or whatever you used at the target for motion correction). and > specifying --bold or --t2. > > doug > > Lena Palaniyappan wrote: > > Dear Doug & others > > > > > > The FSL page on fa to freesurfer registration ( > > http://www.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html) > > <http://www.fmrib.ox.ac.uk/fsl/fdt/fdt_surface.html%29> contain info > > that uses tkregister2. > > > > > > > > To determine freesurfer_to_fa space registration file, do we need to > > go through the freesurfer_to_struc and then struc_to_fa rooutine given > > in fsl pages.? > > > > I wonder if the registration can be done using the bbregister currently. > > > > If that is the case how to get the fsl-type registration file? > > tkregister2 had an option for this but it is not working with bbregister > > > > Cheers > > Lena > > _______________________________________________________ > > *Lena Palaniyappan > > *Clinical Lecturer & Honorary StR | Division of Psychiatry ( > > University of Nottingham) > > South Block 'A' floor| Queens Medical Centre | Nottingham | NG7 2UH > > > > > > This message and any attachment are intended solely for the addressee > > and may contain confidential information. If you have received this > > message in error, please send it back to me, and immediately delete > > it. Please do not use, copy or disclose the information contained in > > this message or in any attachment. Any views or opinions expressed by > > the author of this email do not necessarily reflect the views of the > > University of Nottingham. > > > > This message has been checked for viruses but the contents of an > > attachment may still contain software viruses which could damage your > > computer system: you are advised to perform your own checks. Email > > communications with the University of Nottingham may be monitored as > > permitted by UK legislation. > > > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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