does mri_convert work? glxgears?
tksurfer? qdec? freeview? your installation should work on ubuntu, as it has for other people, so i'm a bit at a loss. n. On Thu, 2011-02-24 at 07:12 +0800, Liukarl wrote: > Hello, Nick > > the output of uname -a is > > "Linux Jie-Liu-Linux 2.6.35-25-generic #44-Ubuntu SMP Fri Jan 21 > 17:40:48 UTC 2011 i686 GNU/Linux" > > thanks > > Jie > > > > > > Subject: Re: [Freesurfer] installation problem > > From: ni...@nmr.mgh.harvard.edu > > To: remembe...@hotmail.com > > CC: freesurfer@nmr.mgh.harvard.edu > > Date: Wed, 23 Feb 2011 11:59:16 -0500 > > > > what is the output of > > > > uname -a > > > > > > On Thu, 2011-02-24 at 00:53 +0800, Liukarl wrote: > > > Hello, Freesurfer experts: > > > > > > > > > > > > I emailed some installation problems a couple days ago, but > haven’t > > > answered yet. I am new to freesurfer and try to install the newest > > > version of freesurfer in Ubuntu system. I closely followed the > > > instructions, and the only difference is that I installed it in my > > > Documents, instead of local folder. > > > > > > > > > > > > > > > > > > Below is the output after “source > $FREESURFER_HOME/SetUpFreeSurfer.sh” > > > > > > > > > > > > > > > > > > -------- freesurfer-Linux-centos4-stable-pub-v5.0.0 -------- > > > > > > > > > > > > Setting up environment for FreeSurfer/FS-FAST (and FSL) > > > > > > > > > > > > FREESURFER_HOME /home/jie/Documents/freesurfer/ > > > > > > > > > > > > FSFAST_HOME /home/jie/Documents/freesurfer//fsfast > > > > > > > > > > > > FSF_OUTPUT_FORMAT nii > > > > > > > > > > > > SUBJECTS_DIR /home/jie/Documents/freesurfer//subjects > > > > > > > > > > > > MNI_DIR /home/jie/Documents/freesurfer//mni > > > > > > > > > > > > Everything seems fine and I also added the .license file to the< > br>> > freesurfer folder. But when I test it by “tkmedit bert > orig.mgz”, it > > > reponds “Illegal instruction” > > > > > > > > > > > > If I type in “recon-all”, it will show > > > > > > > > > > > > “ Required Arguments: > > > > > > > > > > > > -subjid <subjid> > > > > > > > > > > > > -<process directive>…... ” and the other arguments. > > > > > > > > > > > > > > > > > > How to fix the problem and make Fressurfer run? Any help is > > > appreciated. Thanks a lot! > > > > > > > > > > > > > > > > > > PS: my Ubuntu is 32-bit and choose the 32-bit version Freesurfer. > > > > > > > > > > > > Jie > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > The information in this e-mail is intended only for the person to > whom it is > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > contains patient information, please contact the Partners Compliance > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > but does not contain patient information, please contact the sender > and properly > > dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
