do you have permission to write to that directory? Is the partition full? On Thu, 28 Apr 2011, Yunjo Lee wrote:
> Hi all, > > I sent an email a couple of days ago but didn't get any answer yet... > I recently installed FreeSurfer in a virtual machine (Ubuntu). > > I installed it according to the freesurfer website and another source. > http://mirko.windhoff.net/how_to/install_freesurfer_on_ubuntu > > When I ran recon-all, I kept getting the following error message (see below). > Is there anything else that I have to install?? > > Thanks in advance, > Yunjo > > *Here's the error message:* > > 0597: dt=0.056000, rms=0.417 (0.032%), neg=0, invalid=766 > 0598: dt=0.028000, rms=0.417 (-0.000%), neg=0, invalid=766 > gcamFindOptimalTimeStep: Complete in 22111.002 ms > 0599: dt=0.000000, rms=0.417 (0.000%), neg=0, invalid=766 > GCAMwrite(transforms/talairach.m3z): gzip encountered error. > writing output transformation to transforms/talairach.m3z... > mri_ca_register: GCAMwrite(transforms/talairach.m3z) failed > ERROR: mri_ca_register with non-zero status 252 > but continuing despite the error > #-------------------------------------- > #@# CA Reg Inv Tue Apr 26 16:21:09 EDT 2011 > /usr/local/freesurfer/subjects/YC7178/mri > > mri_ca_register -invert-and-save transforms/talairach.m3z > > Loading, Inverting, Saving, Exiting ... > Reading transforms/talairach.m3z > ERROR: cannot find or read transforms/talairach.m3z > ERROR: mri_ca_register with non-zero status 0 > Linux VMBronzeWing 2.6.35-22-generic #33-Ubuntu SMP Sun Sep 19 20:34:50 > UTC 2010 i686 GNU/Linux > > recon-all -s YC7178 exited with ERRORS at Tue Apr 26 16:21:14 EDT 2011 > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
