what image are you displaying in this png? If it is one of the brain*.mgz then your control points aren't working as the wm is still very dark where you place them. Did you run autorecon2-wm after putting the control points in?
On Tue, 10 May 2011, Moiyadi, Ammar wrote: > Dear Freesurfers, > > Freesurfer's autorecon is having trouble tracing both gray and white matter > boundaries in the temporal region of one of my subjects (even after I added > control points for the white matter). I have attached a png screen shot of > this abnormality and was wondering if anyone has any ideas to correct this > since I have never seen such a large tracing error before. > > Your input is much appreciated! > > Ammar > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
