you might need to place the control points a little more carefully, at least one of them looks like it is in gray matter (but hard to say on a single slice).
doug Bruce Fischl wrote: > what image are you displaying in this png? If it is one of the brain*.mgz > then your control points aren't working as the wm is still very dark where > you place them. Did you run autorecon2-wm after putting the control points > in? > > On Tue, 10 May 2011, Moiyadi, > Ammar wrote: > > >> Dear Freesurfers, >> >> Freesurfer's autorecon is having trouble tracing both gray and white matter >> boundaries in the temporal region of one of my subjects (even after I added >> control points for the white matter). I have attached a png screen shot of >> this abnormality and was wondering if anyone has any ideas to correct this >> since I have never seen such a large tracing error before. >> >> Your input is much appreciated! >> >> Ammar >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
