Hi Douglas, Thanks a lot for your suggestion.
It is really strange that I don't find bbregister in the file foler of the freesurfer on my machine. But I find a program named "fslregister". Is that the same? If they are different, is it that I need to update my version of freesurfer so that I can have the program bbregister? Thanks a lot. Best, Xiaoying 2011/5/21 Douglas Greve <gr...@nmr.mgh.harvard.edu> > If you have a T1 that you've run through FS and are happy with the skull > strip, then you can register your T2 with the FS anatomical (with > bbregister), then map the skull stripped T1 into the T2 space > (mri_vol2vol), then apply it to the T2 (mri_mask). > > doug > > On 5/21/11 7:27 PM, Bruce Fischl wrote: > > Hi Xiaoying, > > > > unfortunately there isn't. I would recommend BET (from the FSL). > > > > cheers > > Bruce > > On Sat, 21 May 2011, > > Xiaoying Tang wrote: > > > >> Hi All, > >> > >> I am wondering whether there is any way to skull strip a T2 image using > >> freesurfer. I tried to use the same way as for skullstripping T1 image, > but > >> always failed. > >> > >> I would be most grateful if someone can give me some suggestion. > >> > >> Best, > >> Xiaoying Tang > >> > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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