The full name on my machine is: freesurfer-centos4_x86_64-v4.1.0 So I think the version is 4.1.0
Best, Xiaoying 2011/5/22 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > No, it's not the same what version are you running? > > > > On May 21, 2011, at 11:26 PM, Xiaoying Tang <xta...@jhu.edu> wrote: > > Hi Douglas, > > Thanks a lot for your suggestion. > > It is really strange that I don't find bbregister in the file foler of the > freesurfer on my machine. But I find a program named "fslregister". Is that > the same? > > If they are different, is it that I need to update my version of freesurfer > so that I can have the program bbregister? > > Thanks a lot. > > Best, > Xiaoying > > 2011/5/21 Douglas Greve < <gr...@nmr.mgh.harvard.edu> > gr...@nmr.mgh.harvard.edu> > >> If you have a T1 that you've run through FS and are happy with the skull >> strip, then you can register your T2 with the FS anatomical (with >> bbregister), then map the skull stripped T1 into the T2 space >> (mri_vol2vol), then apply it to the T2 (mri_mask). >> >> doug >> >> On 5/21/11 7:27 PM, Bruce Fischl wrote: >> > Hi Xiaoying, >> > >> > unfortunately there isn't. I would recommend BET (from the FSL). >> > >> > cheers >> > Bruce >> > On Sat, 21 May 2011, >> > Xiaoying Tang wrote: >> > >> >> Hi All, >> >> >> >> I am wondering whether there is any way to skull strip a T2 image using >> >> freesurfer. I tried to use the same way as for skullstripping T1 image, >> but >> >> always failed. >> >> >> >> I would be most grateful if someone can give me some suggestion. >> >> >> >> Best, >> >> Xiaoying Tang >> >> >> > _______________________________________________ >> > Freesurfer mailing list >> > <Freesurfer@nmr.mgh.harvard.edu>Freesurfer@nmr.mgh.harvard.edu >> > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> _______________________________________________ >> Freesurfer mailing list >> <Freesurfer@nmr.mgh.harvard.edu>Freesurfer@nmr.mgh.harvard.edu >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> <http://www.partners.org/complianceline> >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
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