Hi Martin, That worked! Thanks a lot,
Seán On 23 June 2011 18:22, Martin Reuter <mreu...@nmr.mgh.harvard.edu> wrote: > Hi Sean, > > I think the --out... names need to be without the ending (mgh) > so for example --out-avg=long23.thickness-avg > > Maybe that'll fix it. > > Best, Martin > > On Thu, 2011-06-23 at 09:12 -0700, Seán Froudist Walsh wrote: > > Dear FreeSurfers, > > > > I am looking for a little help comparing longitudinal data. I have > > three timepoints on each patient and have been able to get individual > > spc-thickness maps using the long_mris_slopes command where my table > > included all three time points. I would however like to compare > > different timepoints with each other: tp3-tp2 and tp2-tp1. > > > > I was hoping it would be as simple as specifying a new qdec table > > including (for example) only tp3 and tp2, and giving new output names > > using the following command > > > > long_mris_slopes --qdec ./qdec/long.qdec.tableTP23.dat --meas > > thickness --hemi lh --do-avg --do-rate --do-pc1 --do-spc --do-stack > > --do-label --out-avg=long23.thickness-avg.mgh > > --out-rate=long23.thickness-rate.mgh > > --out-pc1=long23.thickness-pc1.mgh --out-spc=long23.thickness-spc.mgh > > --out-stack=long23.thickness-stack.mgh --out-label=long23.cortex > > --time scan --qcache fsaverage > > > > but I get the following error: > > > > mris_calc: > > Sorry, but I seem to have encountered an error. > > While making backup of internal data arrays, > > it seems that some of the backups already exist. > > > > I'm not really sure what the internal data arrays are, and would > > greatly appreciate any help. > > > > Many thanks in advance and all the best, > > > > Seán > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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