Hi, Doug As instructed in the testing page, I typed "tksurfer bert rh pial" and then went to File->Label->Import Annotation. The file rh.aparc.annot was selected to view cortical parcellation labels.
Thanks Jerry ________________________________________ From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] Sent: Friday, September 16, 2011 11:28 AM To: Chen, Xu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Is this normal when importing the annotations in tksurfer? Hi Jerry, what is the command you are running? I mean the full command line including the arguments. doug Chen, Xu wrote: > Hi, > > Just installed FreeSurfer 5.1 ( stable ) to my 64 bit Ubuntu 10.04 > LTS (kernel 2.6.32-33). Playing with it to test the Freesurfer > installation. Everything seems OK when running "tkmedit". However, a > msg shown below pops up when I was trying to view cortical > parcellation labels in tksurfer as instructed in the webpage of > "testingfreesurfer". > > "...... > Found embedded color table in annotation. > 8600 vertices did not have an annotation!" > > What does this message implicate? Could it be attributed to the data > problem (e.g. the inconsistency of vertices between the annotation & > surface ) or my computer system? Is it normal to get it? > > Thanks a lot > > Jerry > > > This e-mail message (including any attachments) is for the sole use of > the intended recipient(s) and may contain confidential and privileged > information. If the reader of this message is not the intended > recipient, you are hereby notified that any dissemination, distribution > or copying of this message (including any attachments) is strictly > prohibited. > > If you have received this message in error, please contact > the sender by reply e-mail message and destroy all copies of the > original message (including attachments). > ------------------------------------------------------------------------ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
