Yes, that message is that the medial all vertices do not have a label. This is normal and nothing to worry about. doug
Bruce Fischl wrote: > Hi Jerry > > were these just the locations on the medial wall around the corpus > callosum that are non-cortical? > > cheers > Bruce > On Mon, 19 Sep 2011, Chen, Xu wrote: > >> Hi, Doug >> >> As instructed in the testing page, I typed "tksurfer bert rh pial" >> and then went to File->Label->Import Annotation. The file >> rh.aparc.annot was selected to view cortical parcellation labels. >> >> Thanks >> Jerry >> ________________________________________ >> From: Douglas N Greve [gr...@nmr.mgh.harvard.edu] >> Sent: Friday, September 16, 2011 11:28 AM >> To: Chen, Xu >> Cc: freesurfer@nmr.mgh.harvard.edu >> Subject: Re: [Freesurfer] Is this normal when importing the >> annotations in tksurfer? >> >> Hi Jerry, what is the command you are running? I mean the full command >> line including the arguments. >> doug >> >> Chen, Xu wrote: >>> Hi, >>> >>> Just installed FreeSurfer 5.1 ( stable ) to my 64 bit Ubuntu 10.04 >>> LTS (kernel 2.6.32-33). Playing with it to test the Freesurfer >>> installation. Everything seems OK when running "tkmedit". However, a >>> msg shown below pops up when I was trying to view cortical >>> parcellation labels in tksurfer as instructed in the webpage of >>> "testingfreesurfer". >>> >>> "...... >>> Found embedded color table in annotation. >>> 8600 vertices did not have an annotation!" >>> >>> What does this message implicate? Could it be attributed to the data >>> problem (e.g. the inconsistency of vertices between the annotation & >>> surface ) or my computer system? Is it normal to get it? >>> >>> Thanks a lot >>> >>> Jerry >>> >>> >>> This e-mail message (including any attachments) is for the sole use of >>> the intended recipient(s) and may contain confidential and privileged >>> information. If the reader of this message is not the intended >>> recipient, you are hereby notified that any dissemination, distribution >>> or copying of this message (including any attachments) is strictly >>> prohibited. >>> >>> If you have received this message in error, please contact >>> the sender by reply e-mail message and destroy all copies of the >>> original message (including attachments). >>> ------------------------------------------------------------------------ >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
