I had previously worked on a script which, given Amazon EC2 credentials, would spin up the instance, upload freesurfer data and run it, then send an email when done - if this would be helpful to anyone I'll bother to finish it, we use local compute resources so I never quite bothered. Now that Pedro's created the image most of the work is done, I had been manually configuring a clean ubuntu image previously.
Thomas Ballinger Psychiatry Neuroimaging Lab Brigham and Women's Hospital 2011/11/11 Pedro Paulo de Magalhães Oliveira Junior <p...@netfilter.com.br> > I've put together the basic tutorial on getting started using Amazon AWS > system: > > It's in the same place Nick pointed out: > https://surfer.nmr.mgh.harvard.edu/fswiki/AmazonCloud > > > --------------------------------------------------------------------- > Pedro Paulo de Magalhães Oliveira Junior > Netfilter & SpeedComm Telecom > -- www.netfilter.com.br > -- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441 > > > > > 2011/11/9 Nick Schmansky <ni...@nmr.mgh.harvard.edu> > >> Pedro Paulo, >> >> thanks for posting the info. i've added this to the Download wiki page, >> and created a stub page for the Amazon Cloud: >> >> https://surfer.nmr.mgh.harvard.edu/fswiki/AmazonCloud >> >> i've never set one up so i have no idea how to do it. maybe someone can >> flesh-out this page as using the ec2 seems like a great alternative to a >> cluster. >> >> n. >> >> >> On Wed, 2011-11-09 at 22:44 -0200, Pedro Paulo de Magalhães Oliveira >> Junior wrote: >> > No. This is for non GPU instances >> > >> > -- iOS 5.0 >> > >> > Em 09/11/2011, às 22:28, Satrajit Ghosh <sa...@mit.edu> escreveu: >> > >> > >> > >> > > hi pedro, >> > > >> > > >> > > will this work with gpu instances as well? >> > > >> > > cheers, >> > > >> > > satra >> > > >> > > 2011/11/9 Pedro Paulo de Magalhães Oliveira Junior >> > > <p...@netfilter.com.br> >> > > Some weeks ago I was asked about a public image (AMI) to run >> > > in the Amazon EC2 infrastructure >> > > >> > > >> > > If you want to use FreeSurfer in the EC2 infrastructure you >> > > can use this public AMI: 060244368407/FREESURFER51 >> > > >> > > >> > > Just for your information this AMI can run a recon-all in 23 >> > > hours in an Amazon AWS Small Instance. So with the current >> > > Amazon cost per Small Instance/Hour you'll have a recon-all >> > > for USD 2.04 >> > > >> > > >> > > Amazon request a credit card in order to create an account >> > > in http://aws.amazon.com >> > > >> > > >> > > Hope it helps, >> > > >> > > >> > > Pedro Paulo Jr. >> > > >> --------------------------------------------------------------------- >> > > Pedro Paulo de Magalhães Oliveira Junior >> > > Netfilter & SpeedComm Telecom >> > > -- www.netfilter.com.br >> > > -- For >> > > mobile: >> http://itunes.apple.com/br/artist/netfilter/id365306441 >> > > >> > > >> > > >> > > >> > > >> > > _______________________________________________ >> > > Freesurfer mailing list >> > > Freesurfer@nmr.mgh.harvard.edu >> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > > >> > > >> > > The information in this e-mail is intended only for the >> > > person to whom it is >> > > addressed. If you believe this e-mail was sent to you in >> > > error and the e-mail >> > > contains patient information, please contact the Partners >> > > Compliance HelpLine at >> > > http://www.partners.org/complianceline . If the e-mail was >> > > sent to you in error >> > > but does not contain patient information, please contact the >> > > sender and properly >> > > dispose of the e-mail. >> > > >> > > >> > > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
