Hi Scott - Which version of FSL are you using? I cannot replicate this behavior of fslstats on our data.
Thanks, a.y On Mon, 12 Dec 2011, Scott Hayes wrote: > Hi, > I have received the following error message (copied from trac-all.log file). > > fslstats -t /Volumes/RAID_4TB/futhink/nc331_recon/dmri/dwi.nii.gz -k > /Volumes/RAID_4TB/futhink/nc331_recon/dlabel/diff/White-Matter++.bbr.nii.gz > -m -s | awk '{print $1/$2}' > > /Volumes/RAID_4TB/futhink/nc331_recon/dmri/dwi_snr.txt > ** ERROR (nifti_image_read): failed to find header file for '-t' > ** ERROR: nifti_image_open(-t): bad header info > Error: failed to open file -t > ERROR: Could not open image -t > Image Exception : #22 :: Failed to read volume -t > terminate called after throwing an instance of 'RBD_COMMON::BaseException' > > > The file (dwi.nii.gz) exists in the correct location, and appears to > have the correct number of frames (60 directions + 10 b0). > We scan on a Siemens 3T tim trio. I unpack the data using > unpacksdcmdir and I specify the resulting .mgz file in the tracula > config file. Running locally on mac os 10.6.8. > > Any suggestions would be appreciated. > Thanks, > Scott > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.