Ok, I just checked the 4.1.4 version of fslstats, and indeed it doesn't
have the -t option. We're using version 4.1.5.
On Mon, 12 Dec 2011, Scott Hayes wrote:
Hi,
I'm using FSL 4.1.4
On Mon, Dec 12, 2011 at 12:43 PM, Anastasia Yendiki
<ayend...@nmr.mgh.harvard.edu> wrote:
Hi Scott - Which version of FSL are you using? I cannot replicate this
behavior of fslstats on our data.
Thanks,
a.y
On Mon, 12 Dec 2011, Scott Hayes wrote:
Hi,
I have received the following error message (copied from trac-all.log
file).
fslstats -t /Volumes/RAID_4TB/futhink/nc331_recon/dmri/dwi.nii.gz -k
/Volumes/RAID_4TB/futhink/nc331_recon/dlabel/diff/White-Matter++.bbr.nii.gz
-m -s | awk '{print $1/$2}' >
/Volumes/RAID_4TB/futhink/nc331_recon/dmri/dwi_snr.txt
** ERROR (nifti_image_read): failed to find header file for '-t'
** ERROR: nifti_image_open(-t): bad header info
Error: failed to open file -t
ERROR: Could not open image -t
Image Exception : #22 :: Failed to read volume -t
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
The file (dwi.nii.gz) exists in the correct location, and appears to
have the correct number of frames (60 directions + 10 b0).
We scan on a Siemens 3T tim trio. I unpack the data using
unpacksdcmdir and I specify the resulting .mgz file in the tracula
config file. Running locally on mac os 10.6.8.
Any suggestions would be appreciated.
Thanks,
Scott
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