Hi Freesurfers, We are trying to do a resting-state functional connectivity analysis using freesurfer. Instead of using the aparc+aseg segmentations as seeds, we would like to use a subject-specific surface labels that we have defined apriori.
In the fcseed-config step, we then don't have a "segid" as in the anatomical seeds case. What should we specify as the -segid and -seg (segmentation)? We also looked into the ROI-based options using "-roi" but this takes seeds from output of "funcroi-config" and requires that we specify a contrast and an analysis. How should we just specify a surface label without generating a new analysis and contrast? Any help or suggestions are appreciated. Lingqiang _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
