Hi Mark, I don't think thalamic structures were part of the a2005s. I think it was only cortical structures. The aparc.a2005s+aseg.mgz will have a whole thalamus segmentation, but that is inherited from the aseg.mgz doug
Kern, Mark wrote: > Hi Doug, > > Yes, the aparc.a2009s+aseg.mgz files were created and I have used them in a > great deal of our analysis of large scale network connectivity of cerebral > cortical regions. We have a desire to look at some subcortical structures > that are part of the a2005s scheme but not included in the a2009s treatment, > especially the subdivision of the thalamus. Any help in this matter would be > greatly appreciated. > > Best Wishes, > Mark > > > On Mar 7, 2012, at 10:47 PM, Douglas Greve wrote: > > >> Hi Mark, was aparc.a2009s+aseg.mgz created? That is the new one. >> doug >> >> On 3/7/12 8:43 AM, Kern, Mark wrote: >> >>> Dear Freesurfer Mavens, >>> >>> After running "recon-all -all" on a set of anatomical data, I wished to >>> used the aparc.a2005s+aseg.mgz in a connectivity analysis pipeline to >>> create some ROI masks. I was particularly interested in the subcortical >>> regions contained in the a2005s scheme. However, the aparc.a2005s+aseg.mgz >>> file was not created during the recon-all processing run. Is there a way >>> to get the a2005s segmentation data? >>> >>> Thanks for your help. >>> >>> Best, >>> >>> Mark >>> >>> Senior Research Scientist >>> Division of Gastroenterology and Hepatology >>> Departmernt of Medicine >>> Medical College of Wisconsin >>> Milwaukee, WI >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
