Thanks Bruce. What's the easiest way to "paste" those labels. Manually through tkmedit, or through the command line?
Anthony On 4/20/12 3:53 PM, Bruce Fischl wrote: > HI Anthony > > I would make sure to include an entire brain labeling in the training > set. You can do this by pasting your manual labels into our aseg of > the subjects in question. > > cheers > Bruce > > > > On Fri, 20 Apr 2012, Anthony Dick wrote: > >> >> Hello, >> >> I developed a new atlas for parcellating the cerebellum, based on 20 >> brains manually segmented by Jörn Diedrichsen, which he was kind enough >> to share (note these also formed the basis for his 2009 paper in >> Neuroimage (46; 39-46). >> >> I got the segmentation to work, but I would not say it works well. As >> you can see from the attached image, it is not ready for prime-time. On >> the left is the brain of subject 1, manually segmented. On the right is >> the brain of the same subject with the automated sementation, based on >> the developed atlas. >> >> My question is, how can I improve it? I realize this is an open question >> and potentially difficult to answer without some probing, but this is a >> resource I think a lot of users would like to have access to, so perhaps >> it is worth the effort. >> >> Anthony >> >> > > > The information in this e-mail is intended only for the person to whom > it is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you > in error > but does not contain patient information, please contact the sender > and properly > dispose of the e-mail. -- Anthony Steven Dick, Ph.D. Assistant Professor Department of Psychology Florida International University Modesto A. Maidique Campus DM 296B 11200 S.W. 8th Street Miami, FL 33199 Phone: 305-348-4202 (try this first) Lab Phone: 305-348-9057 or 305-348-9055 Fax: 305-348-3879 Email: ad...@fiu.edu Webpage: http://www.fiu.edu/~adick Lab Webpage: http://dcn.fiu.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
